Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01504 ATGAATGATAGTAAGGAAATGGAGGTGCAGTATATAGATACTGGATTTCCCTATATTGATGCTGAAAGCTTCATGGATTTCTTCCATGGCCTCACCACGCACGTGCCTGTCAATTACGCTCACGATGGCTCAGTTCTTGATCAGGAAAGTATCTACTGGTCAATGAACACGAACCCTTACAAGTTTGAATTGTCTGGCCCTGTAACTACATGTTATTATGATGCTTACGAGATAAATGATCATATTCCAAGAATGGAGATCAATAGGAGAGAGTGGGAATACCCTTCAACAATGGTCGTGGATGAACCTGCTATAACTGAATCTCCATCTGGAAGAGATGGAGTCACGAGCATGCAGACCGTCCCCGAAGAATGCAGTCCAAATTATCAAGAATCCAGTAGTAGCCAGGTCATGTGGCAGGACAATATTGATCCAGATAATATGACATACGAGGAACTACTGGACCTGGGTGAGGCAGTGGGAACTCATAACCGCGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCAAAGTACAACTTCGGGAGCTTATTCAAAAGAAAAAGTTCTGCGAAAAGGTGTGTGATTTGTCAGATGTCTTACAGAAGAGGTGACCAACAAATAAAATTACCATGCAGCCATGTTTACCACTGTGAATGCATAAAAAGATGGCTTAACATTAGCAAGAAGTGCCCAGTTTGTAACATTGAGGTATTTGGTGAGGATTCAGATAATTAG 741 0.4184 MNDSKEMEVQYIDTGFPYIDAESFMDFFHGLTTHVPVNYAHDGSVLDQESIYWSMNTNPYKFELSGPVTTCYYDAYEINDHIPRMEINRREWEYPSTMVVDEPAITESPSGRDGVTSMQTVPEECSPNYQESSSSQVMWQDNIDPDNMTYEELLDLGEAVGTHNRGLSQELIDTLPTSKYNFGSLFKRKSSAKRCVICQMSYRRGDQQIKLPCSHVYHCECIKRWLNISKKCPVCNIEVFGEDSDN* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01504 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 240 IPR013083 -
Lapu5g01504 246 Pfam Ring finger domain 194 236 IPR001841 -
Lapu5g01504 246 FunFam E3 ubiquitin ligase BIG BROTHER 157 240 - -
Lapu5g01504 246 SMART ring_2 195 235 IPR001841 -
Lapu5g01504 246 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Lapu5g01504 246 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Lapu5g01504 246 SUPERFAMILY RING/U-box 194 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01504 Lapu-Chr5 28310543 28315412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01504 8 244 C3H Transcription Factor Family AT3G63530 53.361 1.76e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01504 K19045 - gmx:100785290 389.423