Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01488 ATGGAAGCCGCAGTGGTCGACCCCGGTTCCAGCTTCCTCAAAGCCGGTTTTGCAATTCCCGATCAAGCTCCCGCCATGATAATTCCCACTCAGATGAAGCGAATGCTCGATGATGGGTCAGTGACTGATAACCCAACAGTCGACGACGTTGCCGTCGATCCGGTGTGTCGAGGTTATGTCAGAGATTGGGATGCCATGGAGGATTTGCTGCATTATGTATTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGGCAGATACTGTTCACGGATCCACTTTGTACTCCAAAGAATCGTCCAAACTCCTTTCCTACAACAGCATTTCTTGAAGCTAACAAGGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCGGGGTTTTATGCCTCTGAACAAGCCGTGTTGTCACTATATGCCGTAGGACGTATCTCTGGATGCACAGTTGATATTGGTCATGGAAAGATAGATATTGCACCAGTGATTGAGGGTGCTGTTAACCACATTGCTTCCAGAAGATTTGAGTTTGGAGGTATTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAATCCAATCCGCTAGTGAATATTAGCCTCCCTGATGTTGAGAAAATAAAACAGCTATACTCATGCTGTGCTGAAGATGAATTAGCTTATCAGCAGATTCAAGATTCTTGCCCTGTGGAGACACATACCCTTCCTGACGGACAGGTCATCACAATTGGAAGAGAAAGATATACCATTGGTGAAGCTTTATTCCAGCCATGTCTATTGGGTTTAGAGGCTCATGGTATTGTTGACCAGCTTGTTCGTACTATTTCAAATGTGTCATCTGATAATCATCGCCAACTTCTCGAAAATACTGTGGTTTGTGGAGGCACTTCTTCTATGACTGGTTTTGAGGAAAGATTTCAGAAGGAATCTAGCCTGAGTTCATCTGCTATTCGACCTACCCTAGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCCTGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTAGTTTTTCCTCAAAATCAACATGTAACCAAGGCAGACTATGATGAAACTGGGCCTTCCATTGTTCACAGGAAATGCTTTTGA 1125 0.4382 MEAAVVDPGSSFLKAGFAIPDQAPAMIIPTQMKRMLDDGSVTDNPTVDDVAVDPVCRGYVRDWDAMEDLLHYVLYTGLGWEIGNEGQILFTDPLCTPKNRPNSFPTTAFLEANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVNHIASRRFEFGGIDLTNFLAQELGKSNPLVNISLPDVEKIKQLYSCCAEDELAYQQIQDSCPVETHTLPDGQVITIGRERYTIGEALFQPCLLGLEAHGIVDQLVRTISNVSSDNHRQLLENTVVCGGTSSMTGFEERFQKESSLSSSAIRPTLVKPPEYMPENLTLYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01488 374 CDD NBD_sugar-kinase_HSP70_actin 4 181 - -
Lapu5g01488 374 SUPERFAMILY Actin-like ATPase domain 2 151 IPR043129 -
Lapu5g01488 374 PRINTS Actin signature 230 246 IPR004000 -
Lapu5g01488 374 PRINTS Actin signature 113 126 IPR004000 -
Lapu5g01488 374 PRINTS Actin signature 23 32 IPR004000 -
Lapu5g01488 374 PRINTS Actin signature 138 157 IPR004000 -
Lapu5g01488 374 Gene3D Actin; Chain A, domain 4 178 265 - -
Lapu5g01488 374 Pfam Actin 2 374 IPR004000 -
Lapu5g01488 374 SMART actin_3 1 374 IPR004000 -
Lapu5g01488 374 PANTHER ACTIN 4 367 IPR004000 -
Lapu5g01488 374 Gene3D - 5 368 - -
Lapu5g01488 374 FunFam Actin-related protein 7 178 265 - -
Lapu5g01488 374 SUPERFAMILY Actin-like ATPase domain 144 374 IPR043129 -
Lapu5g01488 374 Gene3D - 136 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01488 Lapu-Chr5 28142941 28151973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01488 5 374 Cytoskeleton Gene Families AT3G12110 36.247 3.07e-65 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01488 K16615 - gmx:100794153 685.641