Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01459 ATGTTAGGCCTTAGAGACCTGGTTCTCATAGCTCAAACACCTTCCCTGCACCAAGGCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTGCCTTCTTCAGCTGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTGCCACACCCTCACCAAAACAATGAGATTCAAGAGTGTGGTGGTGGTGGTACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCAAAGAAGGGTGTGATCAACATGGATGATGATGAAGATGATGATGAGAGACATCATCATCATAAGGGTGTGATCGAGAGTGAGGAAAACGGGATTTATGGACCCGACTTTAGGGTGTGTCAAGATTGTGGCAATAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACTTGTTGCAAGGGACGTGGATATGATTGCACCACTCACGTGAAGAGCACGTGGATCCCCTCAATTCGCCGCCGGGAGCGGGAGGTGGTGGTGGCTTCCGCCGGTGGTGGTGGTGGCAGTAAGAGGCCAAGAGCTATAGGGGGGTCATCACAAAATGCCACTGCCACTTCTCACAGTTCCAACTCTAATGCCACAACACCTAAGAGCTTGGCTACAATCTCTTCTCACCAAGATGCGAGCTTCAAACAGTCTTTACCTGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTGTCTGCCATTGGGAATGGTGAAGATGAGTTTGCCTACTTGGCAACAGTGCACATCAGTGGCCATGTCTTCAAGGGGTTTCTCTATGACCATGGAGTTGATGGGAAAATTGCAAATGCAGCAGTGCCTTGTGTTTCAGAACTGCAACTGGGAAACAATTGCAGTGGGAAGAACAGGGAATGTTCTTCTGCAATTGGACTTCCAAATAACAACAATGCATACCCTGCTTCTGCCAGCTGA 966 0.4917 MLGLRDLVLIAQTPSLHQGQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQNNEIQECGGGGTTTNYWNLKMCPEVNPPKKGVINMDDDEDDDERHHHHKGVIESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCTTHVKSTWIPSIRRREREVVVASAGGGGGSKRPRAIGGSSQNATATSHSSNSNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVDGKIANAAVPCVSELQLGNNCSGKNRECSSAIGLPNNNNAYPASAS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01459 321 NCBIfam putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Lapu5g01459 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 104 308 IPR007818 GO:0003700|GO:0006355
Lapu5g01459 321 MobiDBLite consensus disorder prediction 175 220 - -
Lapu5g01459 321 MobiDBLite consensus disorder prediction 188 220 - -
Lapu5g01459 321 Pfam Domain of unknown function (DUF702) 125 276 - -
Lapu5g01459 321 NCBIfam LRP1 C-terminal domain 228 275 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01459 Lapu-Chr5 27804752 27810477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01459 1 316 C2H2 Transcription Factor Family AT5G12330 38.024 2.92e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu5g01459 DUF702 3.9e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01459 - - vun:114175485 552.362