Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01454 ATGTCCGGCGACACTTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGTCACTCACCGCGATTCCGATCTAGCCTTCGCCGAGCGCTGCGAAGTCTTCAGCGACGGGGGCGAGGTCGGGTTCCGCACACAAACCGGCGTCGTTTTGTCTCCGGTGCTGAATTCATCGCAATGCGGTGGCGGCGGAGGATCGAAAACCAAGAGGACGAACAGCGTTGGGATGGTGAACGGGAGCATGAGCGTGGTTCACCAGCTCCACGCTATGGTCACCCGCAAGTGCATGAAAACCGACGCTCGCGTGGTGTGCGTCGAGTGGCCTAAGGTTGTGCTGTTGGTTGACGTGTACCTTCCTATTAACGTGTGGAGAGGCTGGCAGTTCCCGCGATCGGGGGCGGTTGCCGCTGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGAAGGTCGATGCTTTCATATCCAGACTATTGTAGGAAGACTCATGGAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTCTGTTGCAAGCTCCATTCCCATGTTAGCAATTCTTCAAGGAAAAGGCTATTTGAACTTCATGAAATTTTCAGGACACTACCCAGTGTAGGAAAACAGCAGATGTTTAATAGTTCCAAAATTATTCCTATGGATCACTCATGCAGATCAGGCATTTGGGAGATATCTGATGATATTTTAACGAAAATTTTATCTTCCCTGGACCCAATGGACCTAACTAGGGTTTCTGAAACGTGTCACCATCTAAGATCATTGGCTGCTTCAGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCGGGCAGCAGTTGAGTGGATGTTGCATCGCGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCAGTTCTCTCAACTGAAGATGGCTTTAATTTCTATGTAAATACTGTATCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGTGGAGGAATGTTTTGTGATGAGCCTGGTTTGGGTAAGACTGTAACTGCTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCCAATCCACCAGATGGGGCACAAGTTGTCTGGTGTCAACATAATGGTAATCAGAGATGTGGTTATTATGAGATCAGTGGTAATAACATAACTGGTTGTTCTACATTGGGTAAAAGGTATGTGAGCCAAGATATCAGTAGAAGTAATGATAACCATGAATACTCCTCCAAAAGAGCCAGAATGTCTGATCCTGATCAACAAATGACTAAACTTCAGGGTTCATGTTCCATGGAAGTAAACAAATCACCTGTGGATGCATGCTTTGATGAATCTATGCATTCAAATCAACACGCCAGGAGTTTGAGCCACGTAAAGAAAAATCTACTCTTCACATATGAAGAGGAATCTATGATTTCGAAGGAAAGAGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCATCACATGCTACACCTCATGTATCTCAAAAGAAGCTGCCTGGGAGGCCTGAAGGTGATCGTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCGCAAGTGGCGAAAGCTTGCAGACAATAGTATGCCTAGTTCTAGTTCTGCATGGTTTTGTAGTATGAACACTGACCCTCTTTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCATAGTACCTCTAAGATAACACACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGTGGTGAGAGACAAAATGTTTCTTTTTTCACCAGCGTCCTTAAGGAGCACTACTCATTGATAAATTCTCAGACAAAGAAAGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGAATAAGAGGTCCTTTTTTAAACATGTGTACTGCATCTAGTAGACATTTTAATGCGTTCCACAAAGTATTTCAAGCGTTTGGCCTCTTAAAAAGAGTAGATAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCGCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGATTTATGTTTGGACTGATTATCGGAAGCCATCTGTGCATTGTCTTGCTTGGGATTACGATATTGTCATAACCACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGTTTTGATGCAAGTGCATTGGTTTAGGGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATATCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAACCGTTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGCCTGTTACATCTACTTCGCAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAACTTGTAATCACTGTACGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAACAGTGGAAGTTTCGCAGGGCAACTATAAAAAATGTCAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGATCCTACTTCTGGGGAGTATACCTCCATAAGATATAATCTCGTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTCGGCATCTGTTGTGCCTTGAATGTGTTTCTATAGACCATACAAAGTGTACATATCCTGGCTGCAGTAAATTGTATGAGATGCAAAGTAGACTTCCCCGACCAGAAAATCCTAATCCGAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGATAATTGGGATCCGGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAGTTGAAAGCTTTGCAAGGAACGAATGAAGAGACCAGCTTCAGTACAGACAATAACAATGACGAGATGCCTATTGAGAATAGTTTCTCTGTCCGTAAAAGAGATGATAAATTAGCATTTCAGAATTGTTCGAAGAGCAGCACAAAGACCAATGTTAACCTTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCTTTAGCCATGTTCCAGCATGATTCAAGTTGTATGGCGCTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGATAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCACCGAATGGGTGCTTCTCGTCCTATTCATGTGGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAAGCTTTTTACAGGAAGCTGATAAATGTAGAAGATCGCCAATTAAGGATGTTGCCGAATCTGAAGATGATGGTGGGGGACGAGGATATAAATCATTGCATGATTTTGCTGAAAGCAGTTATCTATTGAAACTTAGATCTGTGTATACTGATTCAGAAAGTCAAGAAGGTGTTTTGATTGATCAACATCAAGCAAGTAATAACTAA 3984 0.4272 MSGDTSFADHKLCGFLCAVLTVTHRDSDLAFAERCEVFSDGGEVGFRTQTGVVLSPVLNSSQCGGGGGSKTKRTNSVGMVNGSMSVVHQLHAMVTRKCMKTDARVVCVEWPKVVLLVDVYLPINVWRGWQFPRSGAVAAAVFRHLSCDWDERRSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHSHVSNSSRKRLFELHEIFRTLPSVGKQQMFNSSKIIPMDHSCRSGIWEISDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQRAAVEWMLHRERNAELLPHPLYAVLSTEDGFNFYVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLANPPDGAQVVWCQHNGNQRCGYYEISGNNITGCSTLGKRYVSQDISRSNDNHEYSSKRARMSDPDQQMTKLQGSCSMEVNKSPVDACFDESMHSNQHARSLSHVKKNLLFTYEEESMISKEREIGEGLIKAKHASHATPHVSQKKLPGRPEGDRFEYSDTWIQCDACRKWRKLADNSMPSSSSAWFCSMNTDPLYQSCSVPEQHFHSTSKITHLPGFHLKGTHGGERQNVSFFTSVLKEHYSLINSQTKKALTWLAKISTDKLAGMETNGIRGPFLNMCTASSRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDYRKPSVHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLRKCMISARKIDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRYNLVYGGHCVRCKEWCRLPVITPCRHLLCLECVSIDHTKCTYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFSTDNNNDEMPIENSFSVRKRDDKLAFQNCSKSSTKTNVNLEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLSFLQEADKCRRSPIKDVAESEDDGGGRGYKSLHDFAESSYLLKLRSVYTDSESQEGVLIDQHQASNN* 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01454 1327 CDD RING-HC 997 1034 - -
Lapu5g01454 1327 Pfam Helicase conserved C-terminal domain 1138 1239 IPR001650 -
Lapu5g01454 1327 SUPERFAMILY F-box domain 226 268 IPR036047 GO:0005515
Lapu5g01454 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1135 1285 IPR001650 -
Lapu5g01454 1327 CDD DEXDc_SHPRH-like 699 876 - -
Lapu5g01454 1327 SMART helicmild6 1157 1239 IPR001650 -
Lapu5g01454 1327 SMART fbox_2 235 275 IPR001810 GO:0005515
Lapu5g01454 1327 Gene3D - 684 879 IPR038718 -
Lapu5g01454 1327 ProSiteProfiles Zinc finger CW-type profile. 517 568 IPR011124 GO:0008270
Lapu5g01454 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 359 IPR027417 -
Lapu5g01454 1327 SMART ultradead3 273 846 IPR014001 -
Lapu5g01454 1327 Gene3D - 511 570 - -
Lapu5g01454 1327 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 83 1266 - -
Lapu5g01454 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1294 IPR027417 -
Lapu5g01454 1327 ProSitePatterns Zinc finger RING-type signature. 1013 1022 IPR017907 -
Lapu5g01454 1327 Pfam SNF2-related domain 280 921 IPR000330 GO:0005524|GO:0140658
Lapu5g01454 1327 Pfam CW-type Zinc Finger 522 565 IPR011124 GO:0008270
Lapu5g01454 1327 MobiDBLite consensus disorder prediction 408 429 - -
Lapu5g01454 1327 MobiDBLite consensus disorder prediction 412 426 - -
Lapu5g01454 1327 Pfam F-box domain 235 269 IPR001810 GO:0005515
Lapu5g01454 1327 CDD F-box_SF 234 266 - -
Lapu5g01454 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 680 835 IPR014001 -
Lapu5g01454 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 875 IPR027417 -
Lapu5g01454 1327 CDD SF2_C_SNF 1144 1249 - -
Lapu5g01454 1327 Gene3D - 1058 1314 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01454 705 1259 RAD5 or RAD16-like Gene Family AT5G22750 25.042 4.08e-43 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu5g01454 SNF2_N 2.1e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01454 - - gmx:100803102 2352.78