LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g01449	ATGAATATCAGATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGCTCTGGAGTACATAGAAGCCTAGGTGTCCATATATCCAAGGTTTTATCCCTGAAGCTGGATGAATGGACAGATGAACAAGTTGATGTATTGGTGAAATTGGGTGGAAATACAGTAGTCAACAAGAAGTATGAAGCTCACTTGCCAAGTAACATAAGAAAACCAAAACCAAATTCTTCTATTGAAGAACGCTCAGAATTTATTAGGAGAAAATATGAGTTTCTGCAGTTTTTGGATGCTGAGGATAACTTGTCTTGTCCCTTCATACCATCTAATGCAAGAAGTTCATCAGATTCTCAAAGTTCCTCAAGAAATCATTCCCTACGACAAAAACCACATGGTGATAATAAACAACCAACTAAACACCGTATGATTGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAAGGCACTAATCTTGTTGTTCGTGATGTAATGACTAGTGATCCTTATGTGATCATATCTCTTGGTCACCAATCACTGAAGACACGAGTCATAAAGAACAATTTAAATCCAATTTGGAATGAAAGTCTAATGTTGTCAATTCCTGATTACATTCCTCCTCTTAAAATCCTTGTATATGACAAGGATACTTTCTCAAGTGATGATTTTATGGGAGAGGCTGAGATAGACATTGAACCTCTAGTTTCAGCTGCAATGGCATATGAGAAATCTTCAATCAATGAGTCCATGCAGCTTGGAAAATGGGTAGCAAGTGGTGACAACACTCTTGTTAAAGATGGCATCATCTCCCTTGAAAGTGGCAAAATCAAACAAGATGTCTCATTGAGGCTACAACATGTTGAGAGAGGTGTGTTGGAGATTGAACTTGAATGTGTTCCTTTAACTCAATAG	903	0.3721	MNIRSSSLGVFICIKCSGVHRSLGVHISKVLSLKLDEWTDEQVDVLVKLGGNTVVNKKYEAHLPSNIRKPKPNSSIEERSEFIRRKYEFLQFLDAEDNLSCPFIPSNARSSSDSQSSSRNHSLRQKPHGDNKQPTKHRMIEFVGLIKVNVVKGTNLVVRDVMTSDPYVIISLGHQSLKTRVIKNNLNPIWNESLMLSIPDYIPPLKILVYDKDTFSSDDFMGEAEIDIEPLVSAAMAYEKSSINESMQLGKWVASGDNTLVKDGIISLESGKIKQDVSLRLQHVERGVLEIELECVPLTQ*	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu5g01449	300	CDD	ArfGap	5	87	-	-
	Lapu5g01449	300	Gene3D	Arf GTPase activating protein	2	100	IPR038508	-
	Lapu5g01449	300	SMART	arf_gap_3	2	100	IPR001164	GO:0005096
	Lapu5g01449	300	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	93	IPR037278	-
	Lapu5g01449	300	PRINTS	HIV Rev interacting protein signature	9	26	IPR001164	GO:0005096
	Lapu5g01449	300	PRINTS	HIV Rev interacting protein signature	30	51	IPR001164	GO:0005096
	Lapu5g01449	300	MobiDBLite	consensus disorder prediction	106	122	-	-
	Lapu5g01449	300	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	143	236	IPR035892	-
	Lapu5g01449	300	Pfam	C2 domain	145	234	IPR000008	-
	Lapu5g01449	300	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	142	300	-	-
	Lapu5g01449	300	SMART	C2_3c	145	240	IPR000008	-
	Lapu5g01449	300	MobiDBLite	consensus disorder prediction	106	134	-	-
	Lapu5g01449	300	Gene3D	C2 domain	142	299	IPR035892	-
	Lapu5g01449	300	ProSiteProfiles	C2 domain profile.	127	242	IPR000008	-
	Lapu5g01449	300	Pfam	Putative GTPase activating protein for Arf	5	94	IPR001164	GO:0005096
	Lapu5g01449	300	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	1	100	IPR001164	GO:0005096
	Lapu5g01449	300	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	5	300	IPR044518	GO:0005096\|GO:0005543
	Lapu5g01449	300	CDD	C2_ArfGAP	143	287	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g01449	Lapu-Chr5	27682119	27687499	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g01449	5	300	C2H2 Transcription Factor Family	AT4G21160	48.344	2.43e-105	308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g01449	K12486		-	gmx:100799376	465.692