Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01447 ATGAATAGGCTGCTGCGGGTTGGCTGTACAAGCATGGCATCTGGTCATCCTTTCTTTGATGATATACGAAGCAGATCAAGTGTTGATCCTCCTCAAACAGAAGAGCCAACTGAAATTGGTGAACTTGTGAATGAGCCTGTGCAGACTGCTCTTAAACCTCATGGGACTGTTTCAAGCAGTGTTCGTGAGCTGTTAGAGTGCCCTGTGTGTTTAAATGCTATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCTGGTTGCAAACCCAGAGTCCATGATCGGTGCCCTACATGTAGGCATGAGCTTGGTAATATCAGATGTCTGGCACTGGAAAAGGTGGCTGCATCATTAGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATGGGCATATACCCATATTACAGCAAGCTAAAGCATGAATCTCAATGTGCATTTAGACCTTATAATTGTCCATATGCTGGTTCAGAATGTTCTGTTATGGGTGATATACCTTACCTGGTGACCCATCTGAAAGATGATCATAAAGTGGACATGCACAACGGTTGTACTTTTAATCATCGATACGTCAAAACAAATCCACAAGAAGTCGAAAATGCCACGTGGATGTTAACGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTCTACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCTTTTTTGCGGTTTATGGGAGATGACAATGAGGCGAAGAACTACACCTACAGTCTAGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATTAGGGATAGCCACCGCAAGGTTCGTGACAGTTTTGATGGTCTCATCATTCAGAGGAGCATGGCTCTATTCTTTTCTGGGGGTGACAAGAAGGAACTGAAACTAAGAGTCACTGGGAGAATCTGGAAAGAACAGTGGCAACATCTCTTTGCTTAG 966 0.442 MNRLLRVGCTSMASGHPFFDDIRSRSSVDPPQTEEPTEIGELVNEPVQTALKPHGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHDRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAFRPYNCPYAGSECSVMGDIPYLVTHLKDDHKVDMHNGCTFNHRYVKTNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRSMALFFSGGDKKELKLRVTGRIWKEQWQHLFA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01447 321 SUPERFAMILY RING/U-box 59 107 - -
Lapu5g01447 321 FunFam E3 ubiquitin-protein ligase SINAT3 119 175 - -
Lapu5g01447 321 CDD Sina 181 309 - -
Lapu5g01447 321 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Lapu5g01447 321 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 47 314 - -
Lapu5g01447 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 173 IPR013083 -
Lapu5g01447 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 118 IPR013083 -
Lapu5g01447 321 FunFam E3 ubiquitin-protein ligase SINAT5-like 25 118 - -
Lapu5g01447 321 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 308 IPR008974 GO:0005515
Lapu5g01447 321 CDD RING-HC_SIAHs 65 103 - -
Lapu5g01447 321 SUPERFAMILY TRAF domain-like 120 312 - -
Lapu5g01447 321 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
Lapu5g01447 321 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270
Lapu5g01447 321 Pfam Seven in absentia protein family 109 308 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01447 Lapu-Chr5 27657334 27661850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01447 58 315 C3H Transcription Factor Family AT2G41980 79.457 1.35e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01447 K04506 - gmx:100793457 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01447 5 27657334 27661850 Lapu5g01447 5 27657334 27661850 ECH