Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01434 ATGGAAATCGAGGAAAAGAGAAAATTTCCTAAACTGTTGTCAGAACTAATAGTTTTGGCCGATGAGGTTGCTTCTCTTGCTAAAAACTCTGAAATTGAGGTAGATATTTTTGCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATCTTCAATGACTTGAGAGACAAAAACACAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCGAATTTGAAGCAACCGATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTTGTAGCCAGCCTAGAAATTTCCGTGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAACTGATGAATGTGAGATTTGATGGCAGTTTAAGTCAAGCTTCAAGTCCAAAATCAGAGGTTTCTGGCAGTGACATGAAGCTGACTGGAGAAATAGAAGAGGAAATAGTTAATGTTTCCATTGATGATGTTGTTTTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCCTGAGGAGTGAAAGACTGGATGGTGGCTTGATTAATGAGGAAGCAACTCTCGCCATTCTTTTCCATCGTCTAGGTTCGTGTAAGGCAGACAATAGGTTGGCAATCATGCGATTGCTAAGAAGTATTGCTTTAGGAAATGAAGAGAAAAAGGAGAAGATGGTAGATATTGAGTTCTTATCAGCAGTGGTGAAGTCACTGACAAGAGATTCAGAGGAGAGGAAGGAAGCAGTAGGGCTGTTGCTAGAGCTCTCTGACATTCAGGCTGTTCGACGGCGAATTGGAAGGATTCAAGGATGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGACCCTGATGCCTCACATGCTGCCTCAAAGTTACTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCACATGGCTGAGGCTGGCTACTTTAGGCCACTTGTGCAGTATTTGAAAGAAGGTTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCAAGGTTGGAACTCCCTGATCATAGCAAACTTTCCCTTGGAGAATATGGGGCAATTGAACCCCTTGTGAATATGTTCATTACCGGGAAACTTGAGTCCAAGTTGTCAGCTCTAAATGCGCTACAAAATCTGTCAACCTTGGCAGAAAATGTGCAGCGTTTGATCAGATCCGGAATTGCAGGATCTCTGCTACAACTACTTTTCTCAGTTACATCTGTCCTCATGACGTTGCGTGAGCCTGCTTCAGCCATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTTGTCAATGAAGATGTGGCTCAGCAGATGCTTTCCCTTTTGAATCTTTCCAGTCCTATAATTCAAGGCCATCTATTAGAAGCTCTGAATAACATAGCCTCTCATCCTGGTGCATCCAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTGCTCTTACCCTTTCTCAAGGAAAACAGCACCAAAGTCAGAACTAAGGTCTTGCATTTGTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTTTTAAACATAGTTAATATAGTCTCAACATCAACATCAGACAGTGAAAGGGCTGCAGCTGTTGGCATACTGAGTAATCTTCCTGCTAATAATAAAAAAGTGACACAAATATTGCAGAGGGCAAATTTGCTGCCCATTTTAATATCCATCATGTATACTATTACAGGAAGTAACTCATCCACAACAAATAGCTTAGCAGAGAGTATTGCCAGTGTTATGATTCGTTTCACGAATTCCTCTGACAAAAAACTTCAACTTCTCTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTAAAACTTCTCTCAACTGGTTCACCAATCACAAAATCAAGGGCTGCACTCTCACTGGCTCAACTATCACAGAATTCTCTGTCTCTTAGGAAGTCTAGAAAGTCAAGGTGGTCGTGTGTTCCTCCCTCGGTGAATGCATATTGTGAAGTCCATGATGGATATTGCTTTGTCAACAGCACATTTTGTTTGGTCAAGGCTGGTGCTGTTTCTCCCCTTATCCAATTGTTGGAAGAGACTGAGAGAGAAGCAGTTGAAGCTGCTTTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTCCATTGCCAAGTTATCAGGTGTGCAAGCTATTATAAAAAGTCTAGAATTTGGCAATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAAGTTGCAGAATATAGAGTAAAGTATGGAGAATCTGCTCAAGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTATTGGCTGAGCTTGAGCTCTTGCAATCTCAATCAAGTTACTTTTGA 2493 0.4091 MEIEEKRKFPKLLSELIVLADEVASLAKNSEIEVDIFAEFAMLVEKFSPIFNDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLKQPIKQIEDITHDIGRSFGLLLVASLEISVDFREKIGTLQRQLMNVRFDGSLSQASSPKSEVSGSDMKLTGEIEEEIVNVSIDDVVLQLKNGNDEEFAVSLLRLKEFLRSERLDGGLINEEATLAILFHRLGSCKADNRLAIMRLLRSIALGNEEKKEKMVDIEFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASHAASKLLDILSSNSQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEYGAIEPLVNMFITGKLESKLSALNALQNLSTLAENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFLKENSTKVRTKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPANNKKVTQILQRANLLPILISIMYTITGSNSSTTNSLAESIASVMIRFTNSSDKKLQLLSAEQGVIPLLVKLLSTGSPITKSRAALSLAQLSQNSLSLRKSRKSRWSCVPPSVNAYCEVHDGYCFVNSTFCLVKAGAVSPLIQLLEETEREAVEAALHALSTLLQDEIWEGGVNSIAKLSGVQAIIKSLEFGNAKVQEKAIWMLERIFKVAEYRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01434 830 Gene3D - 430 691 IPR011989 -
Lapu5g01434 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 176 830 - -
Lapu5g01434 830 SUPERFAMILY ARM repeat 376 783 IPR016024 -
Lapu5g01434 830 Gene3D - 697 828 IPR011989 -
Lapu5g01434 830 Coils Coil 70 90 - -
Lapu5g01434 830 SUPERFAMILY ARM repeat 164 488 IPR016024 -
Lapu5g01434 830 SMART arm_5 242 281 IPR000225 GO:0005515
Lapu5g01434 830 SMART arm_5 365 405 IPR000225 GO:0005515
Lapu5g01434 830 SMART arm_5 698 738 IPR000225 GO:0005515
Lapu5g01434 830 SMART arm_5 324 364 IPR000225 GO:0005515
Lapu5g01434 830 SMART arm_5 491 531 IPR000225 GO:0005515
Lapu5g01434 830 SMART arm_5 626 666 IPR000225 GO:0005515
Lapu5g01434 830 SMART arm_5 742 782 IPR000225 GO:0005515
Lapu5g01434 830 Gene3D - 202 428 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01434 Lapu-Chr5 27516936 27521469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01434 220 830 U-box Gene Family AT1G76390 29.664 4.12e-50 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01434 K08332 - gmx:100791453 1360.9