Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01420 ATGACCATAAACCATATGGGTTCTAACTGTGAAGAGATTAATGGTGAAGAAAATGATCCATGCCTTTCTGCTATGCTACTAAGCTTCAGCCCAATGGTTTACACTGCTGTGTTGAATGCTGCCATTGAGCTCAACTTGTTTGAGATCATTGCGAAGGCAACAACAACAGAAACACTAGGCGTGTCAGCCTCTGAGATTGCTTCTCATCTTCCAGTTCAGCACAAAAGACTACCTCAAAGGCTTGATCGCATGCTGTCTCTTCTTGCAAGTCACTCTCTTCTCACTTGCTCTACACTCGCAAATGAAGAAGGTAAGGTCCAAAGACTCTTTCAACTTTCACCTTCTGGAAAGTACTTCCTCAACGCTGAAACCACTGCTTCTCTGGCCTTGTTCTCAACGTTCATGAGTCATCCAAAGCTCGTTCAGGCATTGCTTAATTTCAAGGAGATACTTCTTGATTGTGATAATGGACTATACATGAAAGTTCATGGAATGCCTATTTTTGAAGGCATACAATCAGATCCAGCATGGAATCATACCTTCAATGAAGCAATGGCCAATATATGCACAACAGAGATGACAAAGATACTTCAAATATACAGTGGATTTGAAGGAATATCATTGCTTATTGATGTGGGAGGAGGAGTAGGACAAAGTTTGAATATGATAATCTCCAAGTATCCTTCCATAAAGGGTGTCAATTTTGATCTTCCACAAGGCATATTGCACAATTGGTCGGATGAAAATTGTTTGAAAGTTCTAAGTAATTGCTACAATGCTTTGCCAGAAAATGGTAAGGTGGTGGTTGTAGATTTCATAATGCCAGAAGCAATTGGTTCAACTGAAGCAGATAAGATGGTTACTAGCTTTGATAACCTCATGTTTCTTGATGGAGGAAGTGAAAGAACAGAGAAAGAGTTTACGAATTTATGTCAATGTTCTCAATTTTCTTCTTTCAAAGTTGTTTCTCGTGCCTTTACTGCCCTAGGAGTGATGGAATTTCATAAATAG 1011 0.3947 MTINHMGSNCEEINGEENDPCLSAMLLSFSPMVYTAVLNAAIELNLFEIIAKATTTETLGVSASEIASHLPVQHKRLPQRLDRMLSLLASHSLLTCSTLANEEGKVQRLFQLSPSGKYFLNAETTASLALFSTFMSHPKLVQALLNFKEILLDCDNGLYMKVHGMPIFEGIQSDPAWNHTFNEAMANICTTEMTKILQIYSGFEGISLLIDVGGGVGQSLNMIISKYPSIKGVNFDLPQGILHNWSDENCLKVLSNCYNALPENGKVVVVDFIMPEAIGSTEADKMVTSFDNLMFLDGGSERTEKEFTNLCQCSQFSSFKVVSRAFTALGVMEFHK* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01420 336 Gene3D Vaccinia Virus protein VP39 121 240 IPR029063 -
Lapu5g01420 336 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 336 IPR016461 GO:0008168
Lapu5g01420 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 323 IPR029063 -
Lapu5g01420 336 PIRSF O-mtase 239 336 IPR016461 GO:0008168
Lapu5g01420 336 PIRSF O-mtase 1 241 IPR016461 GO:0008168
Lapu5g01420 336 Pfam Dimerisation domain 37 89 IPR012967 GO:0046983
Lapu5g01420 336 Gene3D - 2 119 IPR036388 -
Lapu5g01420 336 FunFam Caffeic acid 3-O-methyltransferase 5 119 - -
Lapu5g01420 336 Gene3D Vaccinia Virus protein VP39 241 324 IPR029063 -
Lapu5g01420 336 PANTHER O-METHYLTRANSFERASE 35 316 IPR016461 GO:0008168
Lapu5g01420 336 Pfam O-methyltransferase domain 241 315 IPR001077 GO:0008171
Lapu5g01420 336 Pfam O-methyltransferase domain 153 239 IPR001077 GO:0008171
Lapu5g01420 336 SUPERFAMILY "Winged helix" DNA-binding domain 17 122 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01420 Lapu-Chr5 27415344 27417237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01420 6 326 Monolignol Biosynthesis Gene Families AT5G54160 38.719 6.15e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01420 - - gmx:100784030 520.776