Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01386 ATGGCCCAGAAAACCGAGAACGAAGAAACCGAGTTCAAGGTTCCCGAAACCATTATTACTCTCTGCGTTAACAACTGCGGCGTCACCGGCAACCCCGCCACCAACAACATGTGCCAGAACTGCTTCACCGCCTTCACCGCCTCCACTGCTTCCACAGCAACAACCTCCTCCGCCGCTGCCGTAATCTCCTCGCCCTCCTCCGCTAGATCCGCTGCCTCCGCGCGTCCTCAGAAGAGATCCTTCCCCGAAGAGCCTTCCTCGGCTGCGGATCCTCCCTCTTCAGACCAAAACACGCCGTCCGAGGCCAAACGCGTCGTCAACCGCTGCTCCGGCTGCCGGCGGAAGGTCGGACTCACCGGATTCCGCTGCAGGTGCGGCGAGCTTTTCTGCGCGGAGCATCGGTACTCCGATCGCCACGATTGCAGTTACGACTATAAAGCCGCCGGTAGAGAAGCCATCGCCAGGGAGAATCCGGTGGTCAGAGCCGCGAAGATCGTCAAAGTCTGA 507 0.6016 MAQKTENEETEFKVPETIITLCVNNCGVTGNPATNNMCQNCFTAFTASTASTATTSSAAAVISSPSSARSAASARPQKRSFPEEPSSAADPPSSDQNTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVRAAKIVKV* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01386 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Lapu5g01386 168 Pfam A20-like zinc finger 21 42 IPR002653 GO:0003677|GO:0008270
Lapu5g01386 168 ProSiteProfiles Zinc finger A20-type profile. 16 50 IPR002653 GO:0003677|GO:0008270
Lapu5g01386 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Lapu5g01386 168 SMART A20_3 19 43 IPR002653 GO:0003677|GO:0008270
Lapu5g01386 168 FunFam Zinc finger AN1-type containing 6 83 164 - -
Lapu5g01386 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 60 - -
Lapu5g01386 168 Pfam AN1-like Zinc finger 109 146 IPR000058 GO:0008270
Lapu5g01386 168 Gene3D - 1 96 - -
Lapu5g01386 168 MobiDBLite consensus disorder prediction 87 101 - -
Lapu5g01386 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 20 167 - -
Lapu5g01386 168 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 105 - -
Lapu5g01386 168 MobiDBLite consensus disorder prediction 60 74 - -
Lapu5g01386 168 SUPERFAMILY AN1-like Zinc finger 93 162 IPR035896 -
Lapu5g01386 168 Gene3D - 97 154 IPR035896 -
Lapu5g01386 168 MobiDBLite consensus disorder prediction 60 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01386 Lapu-Chr5 27055898 27057365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01386 8 168 C2H2 Transcription Factor Family AT3G52800 37.931 5.09e-34 116