LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g01382	ATGGATAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGGATGTCAAATTAGAGGATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCCCCAAATCCCTCCATTACCAAAACGTCTGTGGACTTGAAGGTTAATGATTCAAGGAAAACATCCCAGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCGAAGCTGGTACCACCCCCTGTTAAGTTGAGTACTGATGAGGATGAAGAAGAAACCGAAGCTGGGTATATTTCAAATGATGCTCCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCCGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCGGAATACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCACAGTCAAGGGAATCACAGGTGCCTCGTAATGGGGGTACTAGCACTTCATCTTCCAAACAGACTAGTGGTCATCAAAGATCATCTCAGCAGCATACATCTTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATGCAAGAGCTTCTGGATCTTCAATTCAATCTTCTTCAGTAGGAATCAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCGCTGATGGAGTTTTATATGAAGAAAGCTGCACGAGAAGAAAAGTATAAACAACCTAAGTATTCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAGAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAGGAGCATGTAGAGAGGTCAAAGATTCAGGCTGATAATGTAGGACACAGGCTCCTCTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGATCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGTAATGTTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGTGAGGTGACTTCTGAGGATGACATATACGAGCAGTACAAGAAGCGGATGATGCTTGGTTACCGCTATAGACCCAATCCTCTGAACAATCCTCGAAAGGCTTATTACTGA	1311	0.4325	MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKDVKLEDSKPIKVISGSLSPNPSITKTSVDLKVNDSRKTSQGGSGGKLAFSLKQKSKLVPPPVKLSTDEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQSRESQVPRNGGTSTSSSKQTSGHQRSSQQHTSYQIPASALYESADNARASGSSIQSSSVGISEEPSGSSNADSLALMEFYMKKAAREEKYKQPKYSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY*	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu5g01382	436	MobiDBLite	consensus disorder prediction	122	136	-	-
	Lapu5g01382	436	SMART	G-patch_5	351	398	IPR000467	GO:0003676
	Lapu5g01382	436	ProSiteProfiles	G-patch domain profile.	353	400	IPR000467	GO:0003676
	Lapu5g01382	436	MobiDBLite	consensus disorder prediction	44	77	-	-
	Lapu5g01382	436	SUPERFAMILY	Surp module (SWAP domain)	131	198	IPR035967	GO:0003723\|GO:0006396
	Lapu5g01382	436	Pfam	Surp module	146	195	IPR000061	GO:0003723\|GO:0006396
	Lapu5g01382	436	Gene3D	Surp module	118	204	IPR035967	GO:0003723\|GO:0006396
	Lapu5g01382	436	SMART	surpneu2	145	199	IPR000061	GO:0003723\|GO:0006396
	Lapu5g01382	436	MobiDBLite	consensus disorder prediction	23	145	-	-
	Lapu5g01382	436	MobiDBLite	consensus disorder prediction	200	273	-	-
	Lapu5g01382	436	Pfam	G-patch domain	354	397	IPR000467	GO:0003676
	Lapu5g01382	436	MobiDBLite	consensus disorder prediction	23	39	-	-
	Lapu5g01382	436	PANTHER	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	2	309	IPR040169	-
	Lapu5g01382	436	ProSiteProfiles	SURP motif repeat profile.	147	190	IPR000061	GO:0003723\|GO:0006396

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g01382	350	409	C2H2 Transcription Factor Family	AT5G26610	49.180	6.07e-10	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g01382	K13096		-	gmx:100786213	799.275

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu5g01382	5	27021090	27027409	Lapu5g01382	5	27021090	27027409	ECH