Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01381 ATGAGTGTTATGTATAGTCCTGCTCTCAAGTACTCAGATGTGGAGCTTCAGCTAAGGAAAAACCAAGAAATGGATTCGAGTATTGGACATCCACAACAACACTGTCACCAACCCAATTCTGGACTATTGAGGTACTGTTCTGCTCCAAGCTCATTGCTGGCAAGCCTTATTGACAACAACATTCATGACTTTGTCAATGAGGAATCTTTCTCAAGTGAGGCTCATCCGCATTATCTTCCATCCACAAGTTCAGAAATGGACACCATGTTGTCCAAATTGCTACCATCCAACAATGGATGGAGCAATTCAGAAGCTTTGGAAGAATTTGGAGGCAAGCCTGTAAAGCAGGAAATAGGGGAATCTGTTCCGCAGGGACCACCACAACAGAATGAATATTCTTATGGTGGCTCTCAGTTAATTTACCAATCACAGCAAATTCAAGGCTTGCCAAATTGTTCTTCCAGTGCTGCTGGCAATGCTTTTGGTGGCTCTTTTGGTGTGGTGAACTCCATGGCCTCAGAGAACCAAATTCAATCTAAAATGGGTGCCAGGAACTGCTCCAATCTATTTAGACAAAAGAGCTCCCCTGCTGGATTTTTCTCCATTGCAAATGATCTTGCAGCATTGAGAGAAATAGGTGCCTTTAAAGCCAATGATGTTTCAAATGGACAGGCTACTACATCAACCAGTGGGTTGAATAGTTCTCTTACTTTCTCATCTAGGCCATCTTCATGCTTGAAACGGATGCCACAAATTGCTGAAAATGGAAATGAAAGCCTCGAAGAAAATTGTGATCAAAGTAGGATTCAAGTTAATGAAGATGGTAACTCAAAATTCTACATACCTAGCTTCACCACTGAAATCTGGGAAAGTGCGTCATTCAATGCCCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACCTCAAATGGTTTGGAATCTCAGGAATCAGATTTTAGCTATCAAAATCTTGGTTTGACTCACCATCTCAGCCTACCTAGCTCTTCTACTAAGATGTCATCCATAGAGAAGTTTCTTCAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTTGAGTACATTAAGGACCTGCAGAAACAAGTCAAGGTACTCTCAGATTGCAAGGCCAAGTGCAAATGTACAAGTAATGAGAAGCATTGCACTAGAACTTGTTCCTGA 1326 0.4125 MSVMYSPALKYSDVELQLRKNQEMDSSIGHPQQHCHQPNSGLLRYCSAPSSLLASLIDNNIHDFVNEESFSSEAHPHYLPSTSSEMDTMLSKLLPSNNGWSNSEALEEFGGKPVKQEIGESVPQGPPQQNEYSYGGSQLIYQSQQIQGLPNCSSSAAGNAFGGSFGVVNSMASENQIQSKMGARNCSNLFRQKSSPAGFFSIANDLAALREIGAFKANDVSNGQATTSTSGLNSSLTFSSRPSSCLKRMPQIAENGNESLEENCDQSRIQVNEDGNSKFYIPSFTTEIWESASFNAPKTESDDEIMFSTSNGLESQESDFSYQNLGLTHHLSLPSSSTKMSSIEKFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLQKQVKVLSDCKAKCKCTSNEKHCTRTCS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01381 441 Pfam Helix-loop-helix DNA-binding domain 369 414 IPR011598 GO:0046983
Lapu5g01381 441 FunFam Transcription factor bHLH130 family 364 433 - -
Lapu5g01381 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 429 IPR036638 GO:0046983
Lapu5g01381 441 SMART finulus 369 419 IPR011598 GO:0046983
Lapu5g01381 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 428 - -
Lapu5g01381 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 363 413 IPR011598 GO:0046983
Lapu5g01381 441 Gene3D - 365 436 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01381 Lapu-Chr5 27002349 27005609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01381 34 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.550 1.03e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g01381 HLH 2.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01381 - - gmx:100812802 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01381 5 27002349 27005609 Lapu5g01381 5 27002349 27005609 ECH