Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01374 ATGGTTAGAATAGATATTTTGAACCCAACATTTGTGATCTTGGTATCGCCACGCAACCTTTGTTTGTGTGGAGTTCTTCTCATGGCTGAGCCATCATTCTCCTCTTCCTTCACCTATGACGTCTTCCTCAGCTTCAGAGGAGAAGATACTCGTTACAGCTTCACCGGCAATCTCTACAGAGCCCTTCGTGACAGCGGAATCTGCACCTTCATCGACGACGAGGAGCTCCGCAAAGGAGACGAGATCACCTCTGCGCTCGAGAAGGCAATCGAAGGCTCCAGAATCTTCATCATCGTCCTCTCTCACAACTACGCCTCTTCCTCTTTCTGCTTGAACGAGCTCGCCTACATCCTTCCCTACGCTAAGAGAAAGGGTTTGCTGGTTTTGCCTCTCTTCTACGATGTCGTTCCTTCCCACGTGCGCCACCACACAGGTAGCTTTGGAGAAGCATTGGATACTCATGAGAAGAGGTTCAAAGGTACGAGTGAGGGTTTTGAGCTTAACATGGAGAAGCTCAACGAATGGAAGATGGCTCTACGTCATGTAGCTAACTTCTCTGGCTATCATTTCAAACATGGGGAGGAGTATGAATATGAGTTTATCAAGAAGATAGTTGAATTGGTCTCTAACAAGATTAACCGTGCTCCTTTACATGTTGCGGATTATCCAGTTGGACTAGAGTCACGAGTGCTAGAAATAAAGTTGCTTCTAGATGTAGGATCTGATGATGGTGTCCACATGGTTGGGATCTATGGACTCGGTGGAGTTGGTAAAACCACACTTGCTGTTGCAGTTTATAATTCCATCGCTGACCATTTTGAAGGCTTGTGTTTCCTTGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACATCATCTTCAGAGCCTTCTTCTTTCTCAAATGGTTGGAGAAAAGAATATCAACATATCTAGTGTGAAACAAGGAATTTCAATTATGCAGCACAGGCTAAGGCAGAAGAAGATTCTTCTGATTCTAGATGATGTTGACAAGCTTGAACAGTTACAGGCAATTGTTGGAAGACCTGATTGGTTTGGTCCTGGAAGTAGAGTCATCATCACAACTAGGGACAAACAATTGTTGTCATGTCACTTGGTTGAAAAAACATATGAAGTGAAGAAGTTGAAAAAGAAGGATGCTTTTCGACTGCTAAGTTGGAAAGGTTTTAGAACAGAAGAAGTTGATACAAGTTATGTGAATGTCATGGATCGTGTACTAGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATAGGTTCCAAGTTGTTTAGAAAAAGTATAAAAGAATGGGAATCTGCCATCAACCAGTATGAGAAAATTCCTAACAATCAGATCCTGGAGATACTTAAAATAAGTTTTGATTCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGATATTTCATGTTGCTTCAAAGGATATGCATTGTCAGAGGTGGAAGATATACTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTGGTTGAAAAATCTCTCATAAAATATAGGTGGGGTTGTATAGTTACATTGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGACAGAAATCACCACAAAAGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAAGTGGAGAAATTGAAATCATATGCTTGAACTCCTCCTTACTTGACAAAGAAGAAACAGTAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATCATTAAAAATGGTAATTTTTCGGAAGGTCCTAAATATCTTCCAAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCACAAGGGTTACCCCCAGATTTTCGTTCAAAGAAACTTGTCATTTGCAAATTACCCTCAAGTTGTTTTGGGACACTCGAACTGGCTGAGTTATCAAAGAAGTTCATGAATATGACTGTTTTGAATTTTGACGAATGTGAAGGTTTAACACAGATACCTGATGTATCTGGGCTGCCAAATTTAGAAAACATTTCATTCAAGAATTGTAAGAGTTTAATTACAATTCATGACTCCATTGGGTTCCTAGATAAGCTTAACTCCTTGAATGCTGTTGGTTGCAGCAGGCTTAGGAGTTTTCCACCTCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTTACAGTCTTGAGTGCTTCCCAGAAATATTAGGAAAAATGGAAAAGATGACAGAACTTGTGTTGGAGGACTGTGACATCAAGGAAATTCCATTTTCATTTAAAAATCTCACTGAGCTTCAAACATTAGATTTGCGTTTCTGTCGAATGTTAAGGTTACCAACTAGCATTGTCATGATGCCAAAACTGTCTGAGATTATCGCTTGGGAAGCTGAAGGATGCCTATTTCCAAAACAGGTTGAGGGTGAAGAGAAAGTAAGCTCAATGGTGTCTTCAAATGTAGATTCTCTTCGTCTCTCAGGGTGCAAACTCTCGGATGATTTTTTCCCAACAACTCTTGCATGGTTTTCTAATGTAAAAGATTTGAACCTCTCAAGGAATAATTTCACCGTTCTTCCTGAATGCATCAGCAATTGTCATTTTTTATATAAGCTTACTTTAGATTACTGTCATAGTCTTCGAGAGATTAGAGGGCTTCCGCCAAACATACAACATTTATCTGCAATAAATTGTACATCCTTCACTTCTTCTTGCAGAAGTACTTTACTGAATCAGAAACTGCATGAGGCTGGAAACACCATGTTTTCGTTTTCAGGAGCAATGTTTCCAGAATGGTTCGAGAACCACAGTCGGGGACCATCTTATTCTTTCTGGGTTGGGAACAAATTCCCTGCCATTGCTCTTTGTATTGCTATTGGACCAACTCATGTGGAATATGTTCAAATTGTTGGACCTATCATGATCATCAATGGCATTGAATGTTCACTTCCTGGGGTCGATCCCTATTTAAAGATGCTCCCTGATCACACATATCTTTTCGATCTGCAGCAGATAGTTTTTCCGGATTATCTAGACAGATTTGTTTCAGAAAATGAATGGAACCACGTGGAGATTACATACGCAGTCGAGAAGAGATTCAGTAAAAAAGACAAACATGTGGTGATCCCGGTCTCTATAGAAAATGGAATCTATGTGTCAAAACAGAGGAGCAGCATGGAGAATGTTCGATTCACTGATCCCCGGAAAAAAAGAAGATTAGATGTTGATTCGGAGTTGTAA 3279 0.3992 MVRIDILNPTFVILVSPRNLCLCGVLLMAEPSFSSSFTYDVFLSFRGEDTRYSFTGNLYRALRDSGICTFIDDEELRKGDEITSALEKAIEGSRIFIIVLSHNYASSSFCLNELAYILPYAKRKGLLVLPLFYDVVPSHVRHHTGSFGEALDTHEKRFKGTSEGFELNMEKLNEWKMALRHVANFSGYHFKHGEEYEYEFIKKIVELVSNKINRAPLHVADYPVGLESRVLEIKLLLDVGSDDGVHMVGIYGLGGVGKTTLAVAVYNSIADHFEGLCFLENVRENSNKHGLHHLQSLLLSQMVGEKNINISSVKQGISIMQHRLRQKKILLILDDVDKLEQLQAIVGRPDWFGPGSRVIITTRDKQLLSCHLVEKTYEVKKLKKKDAFRLLSWKGFRTEEVDTSYVNVMDRVLAYASGHPLALEVIGSKLFRKSIKEWESAINQYEKIPNNQILEILKISFDSLEEVEKSVFLDISCCFKGYALSEVEDILRAHYGDCMKYHIGVLVEKSLIKYRWGCIVTLHDLIEDMGKEIVRQKSPQKPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNSSLLDKEETVEWNRKAFKKMKNLKTLIIKNGNFSEGPKYLPNSLRVLEWLKYPSQGLPPDFRSKKLVICKLPSSCFGTLELAELSKKFMNMTVLNFDECEGLTQIPDVSGLPNLENISFKNCKSLITIHDSIGFLDKLNSLNAVGCSRLRSFPPLKLTSLENLELSYCYSLECFPEILGKMEKMTELVLEDCDIKEIPFSFKNLTELQTLDLRFCRMLRLPTSIVMMPKLSEIIAWEAEGCLFPKQVEGEEKVSSMVSSNVDSLRLSGCKLSDDFFPTTLAWFSNVKDLNLSRNNFTVLPECISNCHFLYKLTLDYCHSLREIRGLPPNIQHLSAINCTSFTSSCRSTLLNQKLHEAGNTMFSFSGAMFPEWFENHSRGPSYSFWVGNKFPAIALCIAIGPTHVEYVQIVGPIMIINGIECSLPGVDPYLKMLPDHTYLFDLQQIVFPDYLDRFVSENEWNHVEITYAVEKRFSKKDKHVVIPVSIENGIYVSKQRSSMENVRFTDPRKKRRLDVDSEL* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01374 1092 ProSiteProfiles TIR domain profile. 37 212 IPR000157 GO:0007165
Lapu5g01374 1092 SMART AAA_5 244 378 IPR003593 GO:0016887
Lapu5g01374 1092 SUPERFAMILY L domain-like 582 923 - -
Lapu5g01374 1092 PRINTS Disease resistance protein signature 775 791 - -
Lapu5g01374 1092 PRINTS Disease resistance protein signature 416 430 - -
Lapu5g01374 1092 PRINTS Disease resistance protein signature 323 337 - -
Lapu5g01374 1092 PRINTS Disease resistance protein signature 247 262 - -
Lapu5g01374 1092 SMART till_3 38 185 IPR000157 GO:0007165
Lapu5g01374 1092 Pfam TIR domain 39 215 IPR000157 GO:0007165
Lapu5g01374 1092 Pfam NB-ARC domain 237 465 IPR002182 GO:0043531
Lapu5g01374 1092 Gene3D Ribonuclease Inhibitor 571 745 IPR032675 -
Lapu5g01374 1092 Gene3D - 36 209 IPR035897 -
Lapu5g01374 1092 Gene3D - 381 465 IPR042197 -
Lapu5g01374 1092 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 39 796 IPR044974 GO:0006952
Lapu5g01374 1092 FunFam Disease resistance protein (TIR-NBS-LRR class) 35 214 - -
Lapu5g01374 1092 Gene3D - 210 375 IPR027417 -
Lapu5g01374 1092 Gene3D Ribonuclease Inhibitor 746 932 IPR032675 -
Lapu5g01374 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 475 IPR027417 -
Lapu5g01374 1092 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 188 IPR035897 -
Lapu5g01374 1092 SUPERFAMILY "Winged helix" DNA-binding domain 452 559 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01374 Lapu-Chr5 26930491 26935550 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01374 31 877 WRKY Transcription Factor Family AT4G12020 30.126 1.84e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01374 - - gmx:100780257 1306.58