Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01373 GATGTCCAAGACCAACTCGATTTAGATAACAAGATAAACCTCCGACTCTGTCACTGCAAAATCAAAACTTCAATTTGTTGTTGTTCTTGTCTAACATCTCTTCATTCTCACATTTCACACACCACAACAACAATGGCTTCTCTTCACTCTTCTCTTCTCTTGCCTCCCAATCTCCTTTCCCTTACTACCCCTTCAAGTTCCCCTACTCACATTCTCTTGAACCTGAGACCCTCCACCACCAACTTGCGACCCCTTTTTACCTCACGGCGCCGTTTTGTGAGACCCTTTGCGGTGGCTGAGCAGGCCACGGAAGCCGCGAGGAGGCTCTACGTAGGCAACATTCCCCGCACTGTCAACAACGATGAGCTCGCCAAGATTGTTCAAGAACATGGTGCTGTTGAGAAAACCGAGGTTATGTATGATAAATACTCTGGAAGGAGCCGTCGATTTGCATTTGTTACAATGAAAACTGTAGAGGATGCAAATGCTGTGATCGAGAAACTTAACGGCACTGAAGTTGGAGGGCGTGAGATCAAAGTAAATGTTACTGAAAAACCTTTATCAACACCAGATTTGCCTTTAGTCCAAGCTGAGGAATCACAATTTGTTGACAGTCCCCACAAGGTGTATGTGGGAAACCTAGCCAGGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTCCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACTTTTTCATCAGAAGAAGATGTAGAAGCTGCAATCTCGTCTTTCAACAATTCTCCGTTAGAAGGGCAAAAAATCAGAGTGAACAAGGCATAG 852 0.4437 DVQDQLDLDNKINLRLCHCKIKTSICCCSCLTSLHSHISHTTTTMASLHSSLLLPPNLLSLTTPSSSPTHILLNLRPSTTNLRPLFTSRRRFVRPFAVAEQATEAARRLYVGNIPRTVNNDELAKIVQEHGAVEKTEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEVGGREIKVNVTEKPLSTPDLPLVQAEESQFVDSPHKVYVGNLARTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSPLEGQKIRVNKA* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01373 283 Gene3D - 195 283 IPR012677 -
Lapu5g01373 283 PANTHER OS02G0815200 PROTEIN 102 282 - -
Lapu5g01373 283 CDD RRM1_PSRP2_like 108 187 - -
Lapu5g01373 283 FunFam 30S ribosomal protein 2, chloroplastic 194 283 - -
Lapu5g01373 283 Gene3D - 91 190 IPR012677 -
Lapu5g01373 283 SMART rrm1_1 208 281 IPR000504 GO:0003723
Lapu5g01373 283 SMART rrm1_1 108 181 IPR000504 GO:0003723
Lapu5g01373 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Lapu5g01373 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Lapu5g01373 283 SUPERFAMILY RNA-binding domain, RBD 201 283 IPR035979 GO:0003676
Lapu5g01373 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Lapu5g01373 283 CDD RRM2_PSRP2 205 283 - -
Lapu5g01373 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Lapu5g01373 283 SUPERFAMILY RNA-binding domain, RBD 84 185 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01373 Lapu-Chr5 26917932 26922490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01373 109 283 Eukaryotic Initiation Factors Gene Family AT2G23350 32.022 1.19e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01373 K13126 - gmx:100811197 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01373 5 26917932 26922490 Lapu5g01373 5 26917932 26922490 ECH