Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01353 ATGGAACTTGGTTTAAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGCTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACCGGGCTTAGGCTTCAGCACCACGTTATCAATTGGGCCACTCGTCACTAGGCAAAAGGATCAAGATGAACAAGAAGAATTTGCAGAAGAAGAAGAAGAAGAAACAAAGCCAAAGAACGACAACACCAACAACATCAACACTCACACAACAGAAGATCCCTCCAAGCCCCACAACGACAACCCAGTTCTGCATCAGCTTGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAATGGGAGTTTATCATCTGAGTTGGGAGGTTCTTCTAGGGGCTTGGACGTTAACGCGCAGCCGCCGCTGGCGGAGGATGAGGCGGAGGAAGGGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCCTCATCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTATAAAAGGAACTATGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGTGATGAAGATGATAACAACGGTAGCGGCGGCAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGTTCTTGCTAAACAACTCAATCTACGACCACGCCAAGTAGAAGTGTGGTTTCAAAACAGAAGGGCAAGAACCAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGTTGTGAGACACTAACGGAAGAGAATAGGAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGACTTCAAACCCCTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGCCCTTCTTGTGAGCGTGTGGCTACAAATTCCACATCCACTTCCTCCTCTCTCAGTGCTCCTAATGCCGCCATCAATGCAAATTCAGGAGGCATGACCATTGTCAAAACCAGTGCCAATAACAATGACTCACCCTCCAAAGCCATTGGATTCCCATTTGGTAAACCAAGGTTTCATCCATTTGTTCACACTAGCCAACAACCCCATCAACACCAATCCCCAGCATCTTGA 1143 0.4698 MELGLSLGDSSRPLLGFMEKPREASNQPGLGFSTTLSIGPLVTRQKDQDEQEEFAEEEEEETKPKNDNTNNINTHTTEDPSKPHNDNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPLAEDEAEEGAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLVLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTSTSSSLSAPNAAINANSGGMTIVKTSANNNDSPSKAIGFPFGKPRFHPFVHTSQQPHQHQSPAS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01353 380 Coils Coil 267 290 - -
Lapu5g01353 380 SMART HOX_1 196 258 IPR001356 GO:0003677
Lapu5g01353 380 Pfam Homeobox associated leucine zipper 254 288 IPR003106 GO:0006355|GO:0043565
Lapu5g01353 380 ProSiteProfiles 'Homeobox' domain profile. 194 254 IPR001356 GO:0003677
Lapu5g01353 380 SMART halz 254 297 IPR003106 GO:0006355|GO:0043565
Lapu5g01353 380 MobiDBLite consensus disorder prediction 27 44 - -
Lapu5g01353 380 Pfam Homeodomain 198 252 IPR001356 GO:0003677
Lapu5g01353 380 Gene3D - 202 252 - -
Lapu5g01353 380 MobiDBLite consensus disorder prediction 358 380 - -
Lapu5g01353 380 MobiDBLite consensus disorder prediction 107 121 - -
Lapu5g01353 380 MobiDBLite consensus disorder prediction 176 202 - -
Lapu5g01353 380 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 66 323 - -
Lapu5g01353 380 FunFam Homeobox-leucine zipper protein 18 181 259 - -
Lapu5g01353 380 MobiDBLite consensus disorder prediction 106 148 - -
Lapu5g01353 380 CDD homeodomain 198 255 IPR001356 GO:0003677
Lapu5g01353 380 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Lapu5g01353 380 MobiDBLite consensus disorder prediction 1 89 - -
Lapu5g01353 380 SUPERFAMILY Homeodomain-like 184 255 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01353 Lapu-Chr5 26675893 26678329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01353 114 313 Homeobox Transcription Factor Family AT2G44910 61.429 1.23e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu5g01353 Homeodomain 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01353 K09338 - gmx:100778742 517.309