Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01352 ATGGCGACCCTAAATTCTATTGTGCCTTATGAAAGGATCATAATGTGGTGCATAGGATTGAAGTTGGCAATGGATGTTGATTTGAATGAACAACATTTGGATGGAATAGAAGAACGAATGAGAAGCCTGGAATCTGTAGCTTTCAGGGCTAGGCAACATCAGAGGCGACGAATGAGTCACGATCCGATTCAAATAGTTAATCATGCAGGAGAAGTGGTAACAGTAGCTCATCTTCAAGATGAAGATATGGTGCATGAGGAAGAGGTTGGTGTTGGTGTTGATGTTGGAGGAGAGATGATGGAAGATGGGACAAAGGGTAAAATAAATGCTAGCTATTTGGTTGCTAAAGCATTGGGGGTGAAAACCAATGAAGGGGATGGTTTTGCTGCAAAGTTGTTTGATTGTAACATCTGCTTGAATAGGGCAAAGGATCCTGTTTTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTTGTTAAGTTGCCATATGCTTATTTGAAGGCCAAGGAATGTTCGGTTTGTAAAGGAGAGGTCACAAATGAAAGCCTTATCACAATTTATGGCAACTCAAATGTCCATAACAGTGACAAGTTGAAGTTTGATGAACATGATTACAAAATTCCTTCTAAACCTCCTTCAAAGAGGGTTGAGAGCACTAGGCAGCAGTTCAGAAATTGA 681 0.4038 MATLNSIVPYERIIMWCIGLKLAMDVDLNEQHLDGIEERMRSLESVAFRARQHQRRRMSHDPIQIVNHAGEVVTVAHLQDEDMVHEEEVGVGVDVGGEMMEDGTKGKINASYLVAKALGVKTNEGDGFAAKLFDCNICLNRAKDPVLTCCGHLFCWPCFVKLPYAYLKAKECSVCKGEVTNESLITIYGNSNVHNSDKLKFDEHDYKIPSKPPSKRVESTRQQFRN* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01352 226 SUPERFAMILY RING/U-box 131 185 - -
Lapu5g01352 226 SMART ring_2 135 175 IPR001841 -
Lapu5g01352 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 90 222 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu5g01352 226 Pfam Zinc finger, C3HC4 type (RING finger) 134 180 - -
Lapu5g01352 226 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Lapu5g01352 226 MobiDBLite consensus disorder prediction 204 226 - -
Lapu5g01352 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 223 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01352 Lapu-Chr5 26648288 26649168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01352 88 225 C3H Transcription Factor Family AT3G58030 42.759 9.35e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01352 - - gmx:100778919 237.269