Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01338 ATGGCGACGGCGGCGGAGCCCGAAGCGAAGACTTACTGGTGCCACGAATGCGACATGAGCGTGTCCCTCACGCTCCCTCCCTCGCCTCTCCTCTGTCCCCACTGCCACACCCACTTCCTCGAACTCATGGACTCTCCCTTCTCCCAAAACGACGCCGAATCGCCACTCTTCGACGTCATTTTCCAGGACGCGCTCTTACTCCTCTCCCCTAAGCCTCTCCCCTCCAAACGCCGTTCTCTCCCTTCCGTCCACGTCACCCACTCGCTCCTCTCCGCGCTCGACCCCAATGGCGTCGTTCTCTGCGCCGTGTGCAAAGACCAAATTGCCCTCGACGCCGAGGCCAAACAGTTACCCTGCAAACACCTCTACCACGCGGACTGCATCACGCCGTGGCTCGAGCTCCACGCGTCGTGCCCACTGTGCAGGCTCCGCCTGGAGGAAGAACCGGTGGAGGAGGAGGAAGAGGAAGGTGACGGCGTGGTGACGGAGATCCGGAGGGAGCTGATCGCCAGGCTGACGGAGTTGACGGAGGAGGATTTCTACGGGCTCAGGACCACGCTCAGCCACATTGCCTCGCGCCACGCGCTCATCGAAGAGAACGAGAACCGCCCGCAAATTGGCGAACCTCGAGCTGCCGAATCGCCTTTGCTATAA 654 0.6193 MATAAEPEAKTYWCHECDMSVSLTLPPSPLLCPHCHTHFLELMDSPFSQNDAESPLFDVIFQDALLLLSPKPLPSKRRSLPSVHVTHSLLSALDPNGVVLCAVCKDQIALDAEAKQLPCKHLYHADCITPWLELHASCPLCRLRLEEEPVEEEEEEGDGVVTEIRRELIARLTELTEEDFYGLRTTLSHIASRHALIEENENRPQIGEPRAAESPLL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01338 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 160 IPR013083 -
Lapu5g01338 217 ProSiteProfiles Zinc finger RING-type profile. 101 142 IPR001841 -
Lapu5g01338 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 58 144 - -
Lapu5g01338 217 Pfam zinc-ribbon 11 43 IPR039525 GO:0061630
Lapu5g01338 217 Pfam Ring finger domain 101 142 IPR001841 -
Lapu5g01338 217 SUPERFAMILY RING/U-box 95 146 - -
Lapu5g01338 217 SMART ring_2 101 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01338 Lapu-Chr5 26493305 26496699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01338 5 183 C3H Transcription Factor Family AT3G60080 33.871 6.39e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01338 K11982 - gmx:100775530 290.041