Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01324 ATGGCCGCCGCCGACTCCTCTTCCGCCGCTACAACGCGCCCGCTCTCTCAGAAGGAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACGAAAAACTGCGACTTCCAAATGGAACGCTACGTCTTCAAGCGCCGCACTGATGGTATATACATAATTAACCTTGGCAAAACGTGGGAGAAGCTCCATCTTGCTGCTAGGATTATTGTTGCCATTGAGAACCCACAGGATATCATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTTCTTAAGTTTGCTCAGTACACCGGAGCTCATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACCAATCAGATGCAGACATCCTACAATGAGCCTCGTCTTCTAATTTTAACTGATCCAAGAACAGATCATCAGCCTATCATGGAAGGTGCTCTTGGCAATATTCCAACTATTGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCGGCCAATAACAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTAGGTCGGATGGTGCTGCAGATGCGGGGTACTATTCGTCCTGGTCACAAGTGGGATGTAATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAAGCTAAGCAACAAGAGGAAGATGAAGCAGCACCTGCCCAAGATTTTGCCATCGACTTCAATGCTGCTGGCATCAGCAGCTTCCCTGCCGACAGCCAATGGCCTGCTGCTGCACTCGAGCAACCCTGGACTGAAGAAGCTCCACAACCAATCCCAGCAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGTCCGTTCCCGCACCCGCACCCGCACCGGTTCCCGCACCCGCACCGGTTCCCGCACCCGCACCGGTTCCCGCACCGGTTCCTGCACCGGCTCCACAAGTTGGTGTGCCTCCAGCTCAAACTTTTCCTGCTACTGGCTGGGATTAA 999 0.5255 MAAADSSSAATTRPLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLHLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIMEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLGRMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAAPAQDFAIDFNAAGISSFPADSQWPAAALEQPWTEEAPQPIPAVPTNWTPETAAAGDWGESVPAPAPAPVPAPAPVPAPAPVPAPVPAPAPQVGVPPAQTFPATGWD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01324 332 Hamap 40S ribosomal protein SA [rps-0]. 9 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Lapu5g01324 332 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 PANTHER 40S RIBOSOMAL PROTEIN SA 12 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lapu5g01324 332 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 MobiDBLite consensus disorder prediction 289 321 - -
Lapu5g01324 332 Gene3D - 21 227 - -
Lapu5g01324 332 FunFam 40S ribosomal protein SA 21 227 - -
Lapu5g01324 332 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Lapu5g01324 332 NCBIfam 30S ribosomal protein S2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
Lapu5g01324 332 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Lapu5g01324 332 MobiDBLite consensus disorder prediction 262 332 - -
Lapu5g01324 332 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01324 Lapu-Chr5 26310563 26313484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01324 4 289 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.080 3.42e-148 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01324 K02998 - gmx:100786575 526.168