Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01312 ATGATGCCAGGCAATGGACAGTTAACAGTTCCTCCTGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTCTACTATTACCTGAGGAAGAAGGTTTCATATGAAGCCATTGATCTTGATGTCATAAGAGAAGTGGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGTGAAAATGGAACCATTCTTATATCCTTGTATTTGTACTGTTCTTCTATCTAGGCAGGAAGATGGATGGGTGGTATGCAGGGTTTTCAAAAAGAAAAACCAAAATAGAGGTTTCCAGCAAGAAATTGAAGAAGAAGAGCACATAACCCACATGAGAACAAGTGGTCCTTGCCATGTGCTAGAGCCAAAACATCAGATGCAAGGACTATACGACTACAACTTTGATGGAACAATGCACCTTCCACAGTTGTTCAGTCCAGAATCAGCTGTTGCACCAACCACTACAACCTTGGCCACATCCATGAATGCCATGGACATCCTTGAGTGCTCTCAAAACTTGTTGAGGCTCACAACTACTGGCTGTGGACTTAATCTTATGCAACAACAAGGAGAGAGGTTCAGTGGTGACTGGTCATTCTTGGACAAGCTACTAGCATCCCACCATGGCATGGATCATCAGCATCATCCACAAAGCAAATGTAACCCTCACACTCACCAAGCTGCAACTCCTGTGGGCACTTCAGCTCAGAAATTCCCATTCCATTACCTTGGCTGTGACACCCATGACATCATGAAATTTTCCAAGTAG 756 0.4431 MMPGNGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKVKMEPFLYPCICTVLLSRQEDGWVVCRVFKKKNQNRGFQQEIEEEEHITHMRTSGPCHVLEPKHQMQGLYDYNFDGTMHLPQLFSPESAVAPTTTTLATSMNAMDILECSQNLLRLTTTGCGLNLMQQQGERFSGDWSFLDKLLASHHGMDHQHHPQSKCNPHTHQAATPVGTSAQKFPFHYLGCDTHDIMKFSK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01312 251 MobiDBLite consensus disorder prediction 204 224 - -
Lapu5g01312 251 Gene3D NAC domain 19 63 IPR036093 GO:0003677|GO:0006355
Lapu5g01312 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 57 - -
Lapu5g01312 251 SUPERFAMILY NAC domain 5 58 IPR036093 GO:0003677|GO:0006355
Lapu5g01312 251 ProSiteProfiles NAC domain profile. 10 175 IPR003441 GO:0003677|GO:0006355
Lapu5g01312 251 Pfam No apical meristem (NAM) protein 11 58 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01312 Lapu-Chr5 26168087 26169720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01312 2 58 NAC Transcription Factor Family AT1G79580 84.211 3.41e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g01312 NAM 7.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01312 - - vun:114178728 345.51