Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01306 ATGCCAACTTTGATTGCATCTAGGTTTCTTTTGCTTGTTGGGGAGTCACTCCACTTGAGAAGGGCTTTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTGAAGTGTATGAGCCAGGTGGAACCTAATCATGGTTCCCTCACCCTCTCTAGCATAGGTTTCCAAACTAAAACTGAAGCCGGGAACAAAACCACATCTAAGAAGGTTAAGCCATTTGGTTCACCCTCTGAGAATCTCAAGAGCAAAGGAAAACCCTTTGACATTAATGAGAAGAAGAAGAAAGCAGTTAGGGTTGTAGAAAAACAGCAAATAGAGTTTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTGGCCTCCCACATGTGTTGATTGAGAGGCTAGAGAAGGAGGGTTTTACTGTTCCGACTGAAGTTCAGTCTGCTTCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTATACGGGTTCGGGGAAGACGCTAGCTTATCTGCTTCCTATTCTCTCTGTTGTTGGACCGCTGAGGGGGGAAGGTGATGAGAATGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAACAGCTTGTGGGGGGTGCCAACCGAACCAGGCAGGAAGAAGCTCTCAAGAAAAATAAACCTGCTATTGTTGTTGGCACACCTGGTAGGATAGCAGAGTTAAGTGCATCTGGAAAACTTCGCACTCATGGATGTCGGTATCTAGTATTAGATGAAGTTGATGAACTCTTGTCGTTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAAGTGCAGACCAAAACTCAAATTCTGGAAAGACTGAGCGTCAGCTAATCATGGTTTCTGCAACTGTGCCATTTTCTGTTGTAAGGGCAGCTAGAAGCTGGGGTTGTGACCCTCTTCTTGTCCAAGCTAAGAAAATTGCCCCTCTTGAAACTGTCTCTCCCTCTGAGCCTGTCAGTTTATCACGGTCTTCGCCCAGCTCAGCTATGCCATCTCAAGCCGCAGTAGAGAGTCTGCCTCCTGCCCTGAAACACTATTACTGTGTAACAAGGTTGCAGCACAAAGTTGATATGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCCATGGAGTTACATGGGGATCTAGGGAAGCTTGGGAGGTCAACAACCCTGAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTGACAAATGAATTGTCAGCAAGGGGCTTGGATGTAGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCAACAGATTCAATTCATTATGCGCATCGGGCTGGTCGCACTGGTCGGCTTGGTAGGAATGGTACAGTGCTAACTATATGTGAAGAACCTGAAGTGTTTGTTGTGAAGAAATTGCAGAAGCAGCTGGGAATACCAATTGCATCATGTGATTTTTCAGAGGGGAAGCTACTTGTCACTGAAGAAGAGAAAACAGTAAGCACTTCTAAAAGTTGA 1656 0.4529 MPTLIASRFLLLVGESLHLRRALATSRSVLLHTSVKCMSQVEPNHGSLTLSSIGFQTKTEAGNKTTSKKVKPFGSPSENLKSKGKPFDINEKKKKAVRVVEKQQIEFAPFAAKSFSELGLPHVLIERLEKEGFTVPTEVQSASVPTILNNHDVIIQSYTGSGKTLAYLLPILSVVGPLRGEGDENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSSADQNSNSGKTERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKIAPLETVSPSEPVSLSRSSPSSAMPSQAAVESLPPALKHYYCVTRLQHKVDMLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMKAMELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIASCDFSEGKLLVTEEEKTVSTSKS* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01306 551 CDD DEADc 124 339 - -
Lapu5g01306 551 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 538 IPR001650 -
Lapu5g01306 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 339 IPR027417 -
Lapu5g01306 551 CDD SF2_C_DEAD 379 508 - -
Lapu5g01306 551 Pfam Helicase conserved C-terminal domain 394 499 IPR001650 -
Lapu5g01306 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 526 IPR027417 -
Lapu5g01306 551 Gene3D - 78 340 IPR027417 -
Lapu5g01306 551 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 537 - -
Lapu5g01306 551 SMART ultradead3 132 358 IPR014001 -
Lapu5g01306 551 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Lapu5g01306 551 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 338 IPR014001 -
Lapu5g01306 551 MobiDBLite consensus disorder prediction 61 86 - -
Lapu5g01306 551 Gene3D - 376 540 IPR027417 -
Lapu5g01306 551 SMART helicmild6 418 499 IPR001650 -
Lapu5g01306 551 Pfam DEAD/DEAH box helicase 137 324 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01306 Lapu-Chr5 26050285 26052492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01306 114 527 Eukaryotic Initiation Factors Gene Family AT3G19760 24.155 9.97e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01306 - - gmx:100812968 941.028