Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01291 ATGGCTCCAATGAGTCTCCCACCTGGGTTTAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTATCTGGAAAGGAAAATAACAGGTCGTTCAATAGAGCTTGACATCATTGCTGAAGTTGATTTATACAAGTGCGAACCTTGGGATTTGCCAGATAAATCTTTCCTTCCAAGCAAGGACATGGAATGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAATCTGGATACTGGAAAGCTACAGGGAAAGATAGACCAGTGCACTCTCAAAAGAAGCCAGTTGGCATGAAGAAGACATTGGTATACTATAGAGGTAGAGCACCACATGGCATTAGAACGAACTGGGTTATGCATGAATATCGCTTGATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCCTATTCGCTGTGTCGCATTTTCAAGAAGACGATTCAAATTCCTGCCAAACCTAGTAAAGAAGAAGAACAAGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTAGGAGAAGACTCAAGTGGCACTGAGTTTTCAAGAGAAATGGAAACCGTGGAGGACAAAATTCTCAATCATGAATACCCTAAATTTCCCTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACAGGGATAGCAGAAGATTTTCAACCACACTTTGCCTGTGATGAAGCAAACAGTGCAACAAATTCATATACAATGGGAATAGGATACCCCAGCAATCTATTTCAGGATGTGGAAATACCTTCCTATGCTGGCATGCATTACCAACTTCCATACACACCTTTGGTGCTGGAAGACTTCCCTCAAATTACATTACCTGAGACAAAGTCAACAAAGCCAGAAATGACTGATGCCTGCATGTTATATGACAGATACAGGGACTGCATGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTGCACTCAAGATAACTCCGTCCCTTTTCCCATGCTAGAATGA 1035 0.4261 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQSGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKTIQIPAKPSKEEEQDAKKESMWISEEQMLGEDSSGTEFSREMETVEDKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGIGYPSNLFQDVEIPSYAGMHYQLPYTPLVLEDFPQITLPETKSTKPEMTDACMLYDRYRDCMNGTLEEIISLCCTQDNSVPFPMLE* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01291 344 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Lapu5g01291 344 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lapu5g01291 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 208 - -
Lapu5g01291 344 FunFam Nac domain-containing protein 86 15 160 - -
Lapu5g01291 344 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Lapu5g01291 344 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01291 Lapu-Chr5 25803055 25807068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01291 1 333 NAC Transcription Factor Family AT1G54330 52.096 3.57e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g01291 NAM 8.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01291 - - gmx:100808325 676.011