Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01289 ATGTTCTCTGTAGAGAGAGTGTTTGCACAGCACTTAGAGATGGGCCACCGTTGCTGCAGCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAAAAACTTGTCAGATATATCAACAAACATGGACATAAAAGTTGGAGTTCTGTGCCAAAATATGCAGGATTGCAGAGATGTGGCAAGAGCTGCAGGTTGAGATGGATTAATTATCTTAGGCCGGATCTGAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGATCATAATTGATATTCATAGAATTCTTGGAAACAGATGGGCGCAAATTGCTAAACACCTACCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCATGCATAAAAAAGAAGCTCATTTCTCAAGGGTTAGATCCACAAACCCACAATCTCCTGTCTTCTCATAGAAGAAGCTCAGCATCTACCATCTCCAGTATCCATCAAAAATCAAATTCCATTCTCATTATGAGTTCACACATACCAAATGCACCAGTGGAAACTACTTTTCAAACCTTTTCTTCGTTACCTAAACCTCCACCGAACATTGTTCAAACTCCCTCCAGCATTGTTACATCTGAATATCAAGCATCACCTGTTTTTTCAAATAAATTCTCATCAGAATTGCCTTATGAACTATTAATCGACAACGCCTCCAACATTTGTTCACCTTCATATATGAACCCCCTAGCAGTTGAATTGCCGAACAATGAAAACATTGTTAATTGGGTTTCAAGAGTTAATGTTGATGATTTCAGCACTCAAACACTTGAAGAGGGAACACAAGTGCAGGTGCAACAAGAGAAGGACCAGATTTGCGATAATATGGGAACTGATGTGAGAGAAGCTAACAAGGGCAATCTTGAGAGCAGTGCTTCTTTCGAGAGTTCTAACTTCGATTTTGGGTTGTTGGAGAGTGTACTTTCCTCCGAATTTGTCTCTAGTGATCTCAGTTGTATGGATGAACTTGCATGGAACCTTTAG 1008 0.4048 MFSVERVFAQHLEMGHRCCSKQKIKRGLWSPEEDEKLVRYINKHGHKSWSSVPKYAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSASTISSIHQKSNSILIMSSHIPNAPVETTFQTFSSLPKPPPNIVQTPSSIVTSEYQASPVFSNKFSSELPYELLIDNASNICSPSYMNPLAVELPNNENIVNWVSRVNVDDFSTQTLEEGTQVQVQQEKDQICDNMGTDVREANKGNLESSASFESSNFDFGLLESVLSSEFVSSDLSCMDELAWNL* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01289 335 FunFam MYB transcription factor 18 79 - -
Lapu5g01289 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Lapu5g01289 335 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Lapu5g01289 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Lapu5g01289 335 PANTHER MYB DOMAIN PROTEIN 55 14 304 - -
Lapu5g01289 335 FunFam Transcription factor MYB86 80 154 - -
Lapu5g01289 335 CDD SANT 29 73 IPR001005 -
Lapu5g01289 335 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Lapu5g01289 335 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Lapu5g01289 335 Gene3D - 80 153 - -
Lapu5g01289 335 SMART sant 78 126 IPR001005 -
Lapu5g01289 335 SMART sant 25 75 IPR001005 -
Lapu5g01289 335 CDD SANT 81 121 IPR001005 -
Lapu5g01289 335 Gene3D - 26 78 - -
Lapu5g01289 335 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Lapu5g01289 335 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01289 Lapu-Chr5 25780548 25782091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01289 13 265 MYB Transcription Factor Family AT3G12720 54.307 1.78e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g01289 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01289 K09422 - gmx:100791209 510.76