Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01269 ATGGGGAAAGGAAGAGCACCATGCTGTGATAAGACTCAAGTGAAGAGAGGTCCTTGGAGCCCTGCAGAAGATCTTAAACTCATAGCCTTCATACAGAAATATGGACATGAAAACTGGCGTGCTCTCCCAAAACAAGCAGGGCTTCTAAGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTATCTAAGACCTGATGTGAAGAGGGGAAATTTTACACCAGAGGAGGAAGAAAACATAATAAGGCTACACAAGGCCATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACACACTTAAAGAAAAGGTTGGCTCCTAAAAAGGGTTCAGAATCAAGTGCAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCTTCTTCATCTGAGTCATTTTTCTCAAATGAGAGGCCAAATTCACCTAAGACCACAACACCTGATAATAATGAATTTGATGACCAAGCTGAGCAATTCTTAATGGAAGATAAAATTGAGATTGATTCAGAAAAACAAGTGTCCAGTGAACTAATTGGCATGGCTGAGGATCCAAAAGAGTCATCTTATGAGTCAAATATTGTAAACTCGAGCCAGAATGTTGCACACAAACCAGAACAACAATTGGCTTCTCCATTATATTCTATTGAGTCTAATATTTTAAATTCAGGCCACCAGATAGTTGCAAACAAACCAGAACAACAATTGGCTTCGCCATTATCCTACCTAGGACCTTATGATGTTGGCAGTATATTAGAAGAGGTGGATAAACCAAACCACCTGATTGAAATTCCATGGGAAGCAGATTATGATTTTTGGAAGTTGTTGGACGATGATAGCCTTGGATCTTTTCAATCAAACCAAGTCCAATTAGGTGAGTTCACAGCCAACCAAAACATCATTCTTGGAGAAGAGGGTGTTCAAGATGCTGAAGCCAGGAAGTGGACCCATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATTTCCTACCAAAGAACTATGCAGTTGAGCCACAAATGGACCACACCCAGGCATTTGATTTCGATGATATGACACGACCAGAATCCGAATTGGACTTTGGTTATATCCAATTATGGCCCTCTTGGCCTCAAAATACTAATCTCTAG 1194 0.4045 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEENIIRLHKAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKGSESSADESKPESTITSTSSSSSESFFSNERPNSPKTTTPDNNEFDDQAEQFLMEDKIEIDSEKQVSSELIGMAEDPKESSYESNIVNSSQNVAHKPEQQLASPLYSIESNILNSGHQIVANKPEQQLASPLSYLGPYDVGSILEEVDKPNHLIEIPWEADYDFWKLLDDDSLGSFQSNQVQLGEFTANQNIILGEEGVQDAEARKWTHDFENEFGVVGEIKESNKDHFLPKNYAVEPQMDHTQAFDFDDMTRPESELDFGYIQLWPSWPQNTNL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01269 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lapu5g01269 397 MobiDBLite consensus disorder prediction 130 166 - -
Lapu5g01269 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lapu5g01269 397 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 208 - -
Lapu5g01269 397 FunFam MYB transcription factor 70 145 - -
Lapu5g01269 397 FunFam Transcription factor RAX3 9 69 - -
Lapu5g01269 397 SMART sant 15 65 IPR001005 -
Lapu5g01269 397 SMART sant 68 116 IPR001005 -
Lapu5g01269 397 CDD SANT 71 114 IPR001005 -
Lapu5g01269 397 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lapu5g01269 397 MobiDBLite consensus disorder prediction 114 166 - -
Lapu5g01269 397 MobiDBLite consensus disorder prediction 114 129 - -
Lapu5g01269 397 CDD SANT 18 63 IPR001005 -
Lapu5g01269 397 Gene3D - 71 143 - -
Lapu5g01269 397 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lapu5g01269 397 Gene3D - 16 68 - -
Lapu5g01269 397 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lapu5g01269 397 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lapu5g01269 397 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01269 Lapu-Chr5 25476650 25480024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01269 1 120 MYB Transcription Factor Family AT1G56160 82.500 3.71e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g01269 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01269 K09422 - gmx:100101836 641.728