Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01268 ATGCAGATCTTCGTCAAGACTTTGACGGGAAAGACCATCACGCTGGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGATAGATGTCCAAATACACTTGAGCTGCTCTTCCAAAGGGAGCCTTTGTGACAAGGAAGGTATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAAGATGGTCGCACACTTGCTGATTATAACATACAAAAGGAATCAACACTTCACTTGGTCTTGAGGCTCAGGGGAGGAACCATGATTAAAGTGAAGACTCTAACTGGAAAAGAAATTGAAATTGACATTGAGCCTACTGATACGATTGACCGGATCAAGGAGCGAGTAGAAGAAAAGGAAGGAATTCCACCTGTGCAGCAGAGACTCATATATGCAGGTAAGCAGCTTGCTGATGACAAAACAGCCAAAGAGTACAACATTGAGGGTGGTTCAGTACTTCATTTGGTGCTTGCATTGAGGGGTGGTATTTATTAA 501 0.4491 MQIFVKTLTGKTITLEVESSDTIDNVKIDVQIHLSCSSKGSLCDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIY* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01268 166 ProSitePatterns Ubiquitin domain signature. 115 140 IPR019954 -
Lapu5g01268 166 Gene3D - 1 89 - -
Lapu5g01268 166 FunFam NEDD8 protein 89 166 - -
Lapu5g01268 166 ProSiteProfiles Ubiquitin domain profile. 1 88 IPR000626 GO:0005515
Lapu5g01268 166 PRINTS Ubiquitin signature 99 119 IPR019956 -
Lapu5g01268 166 PRINTS Ubiquitin signature 120 140 IPR019956 -
Lapu5g01268 166 PRINTS Ubiquitin signature 141 162 IPR019956 -
Lapu5g01268 166 SUPERFAMILY Ubiquitin-like 90 164 IPR029071 -
Lapu5g01268 166 ProSiteProfiles Ubiquitin domain profile. 89 164 IPR000626 GO:0005515
Lapu5g01268 166 CDD Ubl_NEDD8 91 164 IPR038738 -
Lapu5g01268 166 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Lapu5g01268 166 PANTHER UBIQUITIN 1 90 - -
Lapu5g01268 166 Pfam Ubiquitin family 3 31 IPR000626 GO:0005515
Lapu5g01268 166 Pfam Ubiquitin family 91 162 IPR000626 GO:0005515
Lapu5g01268 166 Pfam Ubiquitin family 39 86 IPR000626 GO:0005515
Lapu5g01268 166 FunFam Polyubiquitin-C 1 88 - -
Lapu5g01268 166 SMART ubq_7 1 84 IPR000626 GO:0005515
Lapu5g01268 166 SMART ubq_7 89 160 IPR000626 GO:0005515
Lapu5g01268 166 ProSitePatterns Ubiquitin domain signature. 39 64 IPR019954 -
Lapu5g01268 166 Gene3D - 90 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01268 Lapu-Chr5 25440738 25446720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01268 1 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 82.955 1.59e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01268 K12158 - gmx:100794152 277.33