Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01251 ATGGATAAATCAGAGCTGACTCCACAGCGGCAGCAGCAGCAGCAACAACAACAGCATGTGATGGGAGTTGCTGCTGGTGCTAGCCAAATGACCTATTCTCACTACCAGACTGCTCCCGTGGTGGCTGCTGGTACACCTGCTGTAGCTGTTCCTTCTCCAACGCAGGCTCCTGCTGCCTTCTCTAGTTCTGCTCACCAGCTTGCATATCAGCAAGCCCAGCATTTTCACCATCAACAGCAGCAGCACCAACAACAGCAGCTTCAAATGTTCTGGTCAAATCAAATGCAAGAAATTGAGCAAACAATTGACTTCAAAAACCACAGTCTCCCTCTTGCTCGAATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAGAGGAGAACCTTACAAAAGAACGATATAGCAGCTGCTATTTCAAGAAACGATGTTTTTGATTTCTTGGTTGATATTATTCCAAGAGATGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCTACTATTCCATTAGTGGGTTCTCCTGCTGATATGCCCTATTACTATGTCCCTCCGCAGCATCCTGTGGGACCTCCTGGGATGATCATGGGAAAACCAGTTGATCAAGCAGCGCTATATTCTACACAGCAGCCTCGACCTCCCATGGCTTTCATGCCATGGCCCCACACACAACCCCAGCAACAGCAACCACCCCAACAACAGCAACAAACAGATTCATGA 816 0.4571 MDKSELTPQRQQQQQQQQHVMGVAAGASQMTYSHYQTAPVVAAGTPAVAVPSPTQAPAAFSSSAHQLAYQQAQHFHHQQQQHQQQQLQMFWSNQMQEIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPVGPPGMIMGKPVDQAALYSTQQPRPPMAFMPWPHTQPQQQQPPQQQQQTDS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01251 271 Gene3D Histone, subunit A 69 186 IPR009072 GO:0046982
Lapu5g01251 271 Pfam Core histone H2A/H2B/H3/H4 72 171 IPR007125 GO:0003677
Lapu5g01251 271 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 263 - -
Lapu5g01251 271 MobiDBLite consensus disorder prediction 1 22 - -
Lapu5g01251 271 MobiDBLite consensus disorder prediction 7 22 - -
Lapu5g01251 271 MobiDBLite consensus disorder prediction 239 271 - -
Lapu5g01251 271 FunFam Nuclear transcription factor Y subunit gamma 73 186 - -
Lapu5g01251 271 SUPERFAMILY Histone-fold 65 180 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01251 Lapu-Chr5 25149040 25151834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01251 87 215 CCAAT-HAP5 Transcription Factor Family AT1G56170 89.231 8.98e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu5g01251 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01251 K08066 - gmx:100796987 409.838