Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01249 ATGGCCTCAATCCCACAGTTCTATCCAAACTACACGTTTACTACTCACGATCTTTCGGAGTTCCCTACCCCACTCATGAGTGGCAACGCCTCAGTTATGGAGAATACCATGTGGGGTGCTCAAGATAGCTTGATTCCCGCCGTGCTTGATATCAATAATGGTGCACTTGATCATATTGTGTCACTCGATTGTGATACGGTGGCTTGTGCCAATTGGATGCCATCCTTTTCTGAGCAGCTTGGGGGGCTTTCAGACTTGGCCATTTCAGACTGCAAAATGGGCTTCTATGGAGGCTTTCAGAACTTCAACGGCAGATACCAGCCACATATTGGTGAGTTTGGAGAAGAATGTTGTGGGTTTGTGGAAGATGTTAAGCCACCTGCTTATCCTAATGCTGCAAGAGAAAACTGGGGACTTCAAGGTAATCAAATGCAAGCAGTTGAAGAGCCTAACATAAAGGTAGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGGGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGATGAAGACATGACATCAAAAAAACACGAGAGTCATCATCACCACAAAGAAGACTTCTACGGTGGTGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAGGATTGGCTGCAAGAGGCCATGGCAAGTCTAGTTTACTTATCTCATTCTTCACCTGAAGATATGTAA 792 0.4356 MASIPQFYPNYTFTTHDLSEFPTPLMSGNASVMENTMWGAQDSLIPAVLDINNGALDHIVSLDCDTVACANWMPSFSEQLGGLSDLAISDCKMGFYGGFQNFNGRYQPHIGEFGEECCGFVEDVKPPAYPNAARENWGLQGNQMQAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDEDMTSKKHESHHHHKEDFYGGDSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01249 263 Pfam CCT motif 162 204 IPR010402 GO:0005515
Lapu5g01249 263 ProSiteProfiles CCT domain profile. 162 204 IPR010402 GO:0005515
Lapu5g01249 263 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 136 218 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01249 Lapu-Chr5 25098502 25101155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01249 158 212 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 1.90e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu5g01249 CCT 8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01249 - - vra:106761508 485.723