Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01248 ATGAAAGAGAGTGGTAGAAAACAAGGTACCATGTCACCATGTGCGGCCTGCAAGCTTCTTCGAAGGAGGTGCACGAGGGATTGTGTGTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGGTAGTGTGCACAAGGTTTTCGGGGCTAGCAATGTGAACAAAATGCTACAGGAATTACCTGAGCACCAAAGAAGTGATGCAGTGAGTTCAATGGTATATGAAGCCAATGCAAGGGTGAGGGACCCTGTGTATGGATGTGTGGGAGCCATATCCTCTCTCCAACAACAAGTTGATGTGCTTCAAACCCAATTGGCACTGGCACAAGCAGAGGTTGTTCACATGAGAATGAGCCAATTGTCACCACCATCAGACCAACACCACCACCAAGCCTCACTGGTGCCTCCTGAACCCTCCAATTCATCATCAGAAAATTTGTTCCAATCTAGCAGGGTCTTGTCTTCGCAAACCAAGTCCCTTTATGGCATGGACATGGTCGTTGACCAGACCATCATGGGGCAATCCTTGTGGTCATACTAG 543 0.4788 MKESGRKQGTMSPCAACKLLRRRCTRDCVFAPYFPADEPQKFGSVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRMSQLSPPSDQHHHQASLVPPEPSNSSSENLFQSSRVLSSQTKSLYGMDMVVDQTIMGQSLWSY* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01248 180 Coils Coil 92 112 - -
Lapu5g01248 180 MobiDBLite consensus disorder prediction 119 149 - -
Lapu5g01248 180 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Lapu5g01248 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 143 - -
Lapu5g01248 180 MobiDBLite consensus disorder prediction 120 149 - -
Lapu5g01248 180 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01248 Lapu-Chr5 25057881 25062470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01248 1 179 AS2 family AT1G31320 64.286 1.27e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu5g01248 LOB 3.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01248 - - gmx:100803188 291.197