Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01246 ATGGGTGTGAACGAAAATTTCAACAAGGATGATCATCATGAGTGTGTGGATGATGATGAAATTCCACTTCCAGGATTTCGATTCCACCCCACAGATGAAGAGCTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATCAGCATCGAGCTCATCAAACAGATTGATATCTACAAATACGATCCTTGGGATCTTCCAAAAACCAGTGCCAGTGGAGGAGAGAAGGAAGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAACAGCATAAGACCTAACAGAGTTACTGGTTCTGGGTTTTGGAAAGCAACTGGCATAGACAAACCAGTGTACTCACGTGGAGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACACTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGACACCAACACAAACCTTTCCAACTCCAGGAATTATGTAGATGTTCCCCAAGAAGCTGAAATTTGGACATTGTGTAGAATTTTCAAGAGAAATGTGTCACAGAGGAAGCACGTGCCAGACTTGAAACAAGTATCTGCTAAGCGCAATGCATTTTATGACAAGAGCTCCAGAACGAGTAATTTGGAGTTTGACAGTGCTAACCAAGAATCGTATATAAACTTTGGTGGCCACTATCACAATGATCAGAAACCTGTCATCAACTATACAAGCATTGATAAAAGGAATCAGTTTAATGTGATGAGTCAGTTGTTTTCTCCTGTGGCACAGCAGCAACCTCAACTAACTGCACCATCTTCTAACCTTTGGAATAACCCACCTGGGAACGATTTCTTCACATTCGATAACTGGGATGAACTTGGATCAGTGGTGAAGTTTGCTGTTGATTCGCCTAGCTCATAG 927 0.4272 MGVNENFNKDDHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKTSASGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSRGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTNLSNSRNYVDVPQEAEIWTLCRIFKRNVSQRKHVPDLKQVSAKRNAFYDKSSRTSNLEFDSANQESYINFGGHYHNDQKPVINYTSIDKRNQFNVMSQLFSPVAQQQPQLTAPSSNLWNNPPGNDFFTFDNWDELGSVVKFAVDSPSS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01246 308 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
Lapu5g01246 308 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
Lapu5g01246 308 FunFam NAC domain-containing protein 35 31 189 - -
Lapu5g01246 308 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Lapu5g01246 308 SUPERFAMILY NAC domain 23 186 IPR036093 GO:0003677|GO:0006355
Lapu5g01246 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01246 Lapu-Chr5 24997403 24999396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01246 19 195 NAC Transcription Factor Family AT5G39820 58.421 1.00e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g01246 NAM 4.8e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01246 - - gmx:100790471 546.969