Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01240 ATGGACTATAAGCACAATATCCGTAACATGTCCGTCATTGCCCATGTTGATCACGGAAAATCAACACTCACTGATTCTCTTGTGGCCGCTGCTGGAATTATCGCTCAGGAAGTGGCAGGTGATGTTCGTATGACTGATACTCGTGCTGATGAAGCTGAGCGTGGTATCACAATCAAGTCTACTGGTATCTCACTCTATTACGAGATGAGTGATGATTCTCTCAAGAATTTTAAGGGAGAGCGTAATGGGAATGAGTATCTCATTAATCTCATTGACTCTCCTGGACACGTGGACTTCTCATCTGAGGTCACTGCTGCACTCCGTATTACTGATGGAGCCCTAGTGGTGGTGGACTGTGTTGAAGGAGTCTGCGTCCAAACTGAAACTGTGCTACGTCAAGCTTTGGGAGAAAGGATTAGGCCTGTTCTGACTGTCAACAAGATGGACAGGTGCTTCCTTGAGCTCCAGGTTGATGGAGAGGAGGCATACCAAACATTCCAGAGGGTTATTGAGAATGCTAACGTTATCATGGCTACATATGAAGATCCACTTCTAGGTGATGTTCAGGTCTACCCAGAGAAAGGGACAGTTGCTTTCTCTGCAGGGCTACATGGGTGGGCTTTTACCCTGACCAACTTCGCCAAGATGTATGCCTCAAAGTTTGGAGTTGATGAAGGGAAGATGATGGAAAGGCTTTGGGGAGAAAACTTCTTTGATCCAGCCACCAAGAAATGGTCCAGCAAGAACACTGGATCTGCTACCTGCAAGCGTGGGTTTGTTCAGTTCTGCTACGAGCCCATCAAGCAGATCATTAAGACTTGCATGAATGATCAGAAGGATAAGCTGTGGCCTATGCTGCAAAAGCTTGGGGTCACCATGAAATCTGAGGAAAAAGACCTCATGGGTAAAGCATTGATGAAGCGTGTCATGCAAACCTGGCTTCCAGCAAGTACTGCTCTATTGGAAATGATGATCTTTCATCTTCCCTCTCCATCTACTGCGCAGAAGTACCGTGTGGAGAATTTGTACGAGGGTCCTCTTGATGATCAATATGCTGCAGCTATTAGAGCCTGTGATCCTGAAGGTCCTCTGATGCTCTATGTGTCAAAGATGATTCCAGCATCTGATAAGGGTAGATTCTTTGCTTTTGGACGTGTGTTCTCTGGCAGGGTTTCAACTGGTTTGAAGGTGAGGATTATGGGACCAAATTATGTTCCTGGAGAGAAAAAAGATTTGTATGTTAAGAGTGTTCAACGAACTGTTATTTGGATGGGAAAGAGACAAGAAACTGTTGAGGATGTGCCATGTGGTAACACAGTGGCTATGGTTGGTTTGGATCAATTCATCACGAAGAATGCTACATTGACAAATGAGAAGGAAGTTGATGCTCACCCTATTAGAGCTATGAAGTTTTCTGTCTCCCCTGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCCTCAGATCTTCCCAAGCTTGTTGAAGGTCTCAAGCGGTTGGCCAAGTCTGATCCTATGGTTGTTTGTACCATTGAGGAGTCTGGTGAGCACATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAGGATGATTTCATGGGTGGAGCTGAGATCGTGAAATCTGACCCTGTTGTGTCGTTTAGGGAGACTGTCCTGGAGAGGTCATGCCGCACTGTGATGAGCAAGTCACCCAACAAGCACAACCGTCTGTACATGGAAGCAAGGCCAATGGAGGATGGTTTGGCTGAAGCCATTGATGATGGCAAGATTGGACCAAGGGATGACCCCAAGGTTCGTTCAAAGATCTTGTCTGAAGAATTTGGGTGGGACAAGGATCTTGCTAAGAAAATTTGGTGTTTTGGTCCTGAGACCACTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTGCAGTATCTGAATGAAATCAAGGATTCTGTGGTTGCTGGATTCCAGTGGGCATCGAAAGAAGGTGCATTGGCTGAAGAGAACATGAGAGCTATCTGCTTTGAAGTATGTGATGTGGTCCTTCACGCTGATGCTATTCACAGAGGTGGTGGTCAGATCATTCCTACTGCCAGGAGAGTGTTCTATGCGTCCCAGATAACTGCAAAACCCAGGCTTCTGGAGCCTGTCTACCTGGTTGAAATCCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTCAATCAGAAACGTGGACACGTCTTTGAGGAAATGCAGAGGCCAGGTACCCCACTCTACAACATCAAAGCGTATCTCCCAGTCATTGAGTCCTTTGGTTTCTCAAGCACATTGAGGGCTGCAACATCTGGCCAAGCTTTCCCACAGTGTGTCTTCGATCACTGGGACATGATGTCCTCTGACCCATTGGAGGCTGGATCACAAGCTTCTCAACTTGTGGCTGACATTCGCAAGAGGAAGGGCTTGAAGGAACAGATGACTCCTCTCTCCGATGACTTGTTGTACTCGTTATTTGTGCTTGCGTCGATGTATTTTTGCTTCTCCATAGGATTTTGCATCGATGTGAAGTTCACAGTTGATCAACTTCGGCGGATTATGGACCGCAAACACAACATTAGGAACATGTCTGTTATTGCTCACGTAGATCATGGAAAGTCCACACTGACTGATTCTCTTGTGGCTGCTGCTGGAATCATAGCACAAGAGGTTGCAGGAGATGTGAGGATGACGGATACCCGTCAAGATGAAGCTGAGAGAGGTATCACTATCAAGTCCACTGGCATCTCTCTCTACTATGAAATGCCAGAGGGTGAGTTGAAGAATTTCAAGGGAGAGCGTGAAGGGAATGAGTTCCTTGTAAATCTCATTGACTCACCTGGGCATGTGGACTTCTCATCAGAGGTCACGGCGGCACTTCGCATCACTGATGGAGCACTTGTGGTGGTGGATTGTGTTGAGGGTGTATGCGTACAGACAGAAACTGTGCTAAGACAAGCTCTTGGAGAAAGGGTTAAGCCTATTTTGGCAGTTAACAAGATGGATAGATGCTTCCTCGAGCTCAACCTTGATCCAGAGGAGGCATACCTTACATTTCAGAGAGTTGTAGAGAGTGCAAATGTGATCATGGCAACCTATGAAGATGCTCTACTTGGTGATATTCAGGTGTACCCTGAGAAGGGGACAGTTGCTTTCTCTGCAGGTTTGCATGGATGGGGTTTTACACTTACCAACTTTGCCAAGATGTATGCTTCCAAGTTTGGAATTGATGAGGCAAAGATGATGAGTAGGCTTTGGGGTGCGAATTTCTTTGATTCTGCCACCAGAAAGTGGACCAACAAACACACCGGGACTTCTACTTGTAAGCGTGGCTTTGTTATGTTATGCTATGAACCGATCAAACATATTATTGAGCTCTGCATGAGCGACAAGAAAGATGAGCTGTGGCCCAAGTTGCAAAAGCTTGGGGTAAACATGAAGTCAGAGGAAAAGGAATTGACAGGAAAGGCTTTGATGAAGCGTGTTATGCAGAGTTGGCTCCCGGCAAGTAGTGCCCTTCTGGAGATGATGATATATCATCTTCCCTCTCCTGCAAGTGCTCAGCAGTATCGTGTTCAGAATTTGTACGATGGTCCCCTGGATGATCCTTATGCTTCTGCTATCAGAAACTGTGACCCGGAAGGGCCTCTAATGCTCTATGTCTCAAAGATGATTCCTGCTTCTGATAGGGGTAGGTTTTATGCTTTTGGTCGAGTCTTCTCTGGAAGGGTTTCAACTGGTTTGAAAGTCAGAATCATGGGACCAAACTATATCCCAGGAGAGAAAAAGGACTTGTATGTTAAGAGTGTTCAGCGAACTGTAATTTGGATGGGAAAGAAACAGGAAACTGTTGAGGATGTGCCTTGTGGCAACACGGTAGCTATGGTGGGTTTGGATCAATTCATAACCAAAAATGCTACTTTGACCAATGAGAAGGAAGGTGATGCACACCCCATTCGAGCTATGAAGTTTTCTGTGTCACCCGTGGTAAGTGTTTCTGTTACAAGCAGGGTTCCGTCAGATCTTCCTAAGCTACAAGAAGGTCTAAAACGTTTAGCAAAGTCAGACCCTATGGTGGTCTGCACAATGTCAGAGACAGGAGAGCATATAATATCTGCTGCAGGTGAGCTTCATCTTGAAATCTGCTTGAAGGACTTGCAGGTCGATTTTATGAATGGAGTAGAGGTTTCAATATCTGATCCTATTGTCTCTTTTCGCGAGACTGTGTTTGAGAGGTCTTGCCGTACAGTGATGAGCAAGTCACCCAACAAACACAACCGCCTATACATGGAAGCAAGGCCTATGGAAGATGGATTAGCAAAGGCTATTGATGATGAAAAGATTGGACCAGGGTTTGACCCAAAAAGTAGGTCTAAAATATTGTCAGAGGAGTTTGGTTGGGACAAGGATCTGGCCAAGAAAATATGGTGTTTTGGCCCCGAGGGTAAAGGACCCAACATGGTGGTAGATACTTGCAAGGGCGTACAGTACCTCAATGAAATCAAAGACTCAGTTGTTGCTGGGTTCGAGTTAGCATCAAAAGCAGGTCCAATGGCTGATGAGAACATGAGAGGGGTCTGCTTTGAGATTTGTGATGTGGTTCTTCATGCTGATGCTATTCACAGAGGAGGTGGCCAGATCATTCCAACAGCTAGAAGGGTCATCTATGCAGCCACACTGACAGCAAAACCGAGACTTCTGGAGCCTGTGTATCTGGTGGAAATACAGGCACCTGAACAGGTTCTTGGCGGTATATTCAGTGTTCTTAACCAGAAAAGAGGGCACGTGTTTGAGGAAATTCAGAGGCCTGGCACCCCACTTTACAATGTCAAGGCATATTTGCCTGTTATTGAGTCATTTAAATTCAATGAATCCCTAAGGGCTCAAACTGGGGGGCAGGCTTTCCCCCAGCTAGTATTTGACCATTGGGATATGGTGTCATCTGATCCACTAGAACCTGGCACTCCTGCTGCTGCACGCGTTGCAGAGATAAGAAGGAAGAAAGGCTTGAAGGAACAAATCACACCTCTCTCTGAGTTCGAGGACAGGCTTTAA 5076 0.4612 MDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDDSLKNFKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEGKMMERLWGENFFDPATKKWSSKNTGSATCKRGFVQFCYEPIKQIIKTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASTALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAAAIRACDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGKIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQASQLVADIRKRKGLKEQMTPLSDDLLYSLFVLASMYFCFSIGFCIDVKFTVDQLRRIMDRKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMPEGELKNFKGEREGNEFLVNLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERVKPILAVNKMDRCFLELNLDPEEAYLTFQRVVESANVIMATYEDALLGDIQVYPEKGTVAFSAGLHGWGFTLTNFAKMYASKFGIDEAKMMSRLWGANFFDSATRKWTNKHTGTSTCKRGFVMLCYEPIKHIIELCMSDKKDELWPKLQKLGVNMKSEEKELTGKALMKRVMQSWLPASSALLEMMIYHLPSPASAQQYRVQNLYDGPLDDPYASAIRNCDPEGPLMLYVSKMIPASDRGRFYAFGRVFSGRVSTGLKVRIMGPNYIPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEGDAHPIRAMKFSVSPVVSVSVTSRVPSDLPKLQEGLKRLAKSDPMVVCTMSETGEHIISAAGELHLEICLKDLQVDFMNGVEVSISDPIVSFRETVFERSCRTVMSKSPNKHNRLYMEARPMEDGLAKAIDDEKIGPGFDPKSRSKILSEEFGWDKDLAKKIWCFGPEGKGPNMVVDTCKGVQYLNEIKDSVVAGFELASKAGPMADENMRGVCFEICDVVLHADAIHRGGGQIIPTARRVIYAATLTAKPRLLEPVYLVEIQAPEQVLGGIFSVLNQKRGHVFEEIQRPGTPLYNVKAYLPVIESFKFNESLRAQTGGQAFPQLVFDHWDMVSSDPLEPGTPAAARVAEIRRKKGLKEQITPLSEFEDRL* 1692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01240 1691 FunFam Translation elongation factor 2 557 710 - -
Lapu5g01240 1691 FunFam Translation elongation factor 2 851 1085 - -
Lapu5g01240 1691 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 865 1192 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 Gene3D - 2 200 IPR027417 -
Lapu5g01240 1691 CDD eEF2_snRNP_like_C 715 793 - -
Lapu5g01240 1691 FunFam Translation elongation factor 2 331 472 - -
Lapu5g01240 1691 CDD aeEF2_snRNP_like_IV 547 719 - -
Lapu5g01240 1691 Gene3D - 1571 1691 - -
Lapu5g01240 1691 CDD EF2 868 1078 - -
Lapu5g01240 1691 SUPERFAMILY Ribosomal protein S5 domain 2-like 1410 1574 IPR020568 -
Lapu5g01240 1691 SUPERFAMILY Translation proteins 1190 1320 IPR009000 -
Lapu5g01240 1691 FunFam Translation elongation factor 2 1571 1691 - -
Lapu5g01240 1691 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 IPR031157 -
Lapu5g01240 1691 Gene3D - 558 707 IPR014721 -
Lapu5g01240 1691 Gene3D - 1418 1570 IPR014721 -
Lapu5g01240 1691 SUPERFAMILY Translation proteins 330 464 IPR009000 -
Lapu5g01240 1691 Gene3D Elongation Factor G (Translational Gtpase), domain 3 474 551 - -
Lapu5g01240 1691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 852 1189 IPR027417 -
Lapu5g01240 1691 SUPERFAMILY EF-G C-terminal domain-like 1575 1681 IPR035647 -
Lapu5g01240 1691 CDD EF2_II 1223 1318 - -
Lapu5g01240 1691 CDD EF2_snRNP_III 1348 1407 - -
Lapu5g01240 1691 CDD EF2_II 363 458 - -
Lapu5g01240 1691 FunFam Translation elongation factor 2 711 829 - -
Lapu5g01240 1691 Gene3D Yeast translation eEF2 (G' domain) 210 314 - -
Lapu5g01240 1691 FunFam Translation elongation factor 2 1417 1570 - -
Lapu5g01240 1691 Pfam Elongation Factor G, domain III 475 537 IPR041095 -
Lapu5g01240 1691 Pfam Elongation Factor G, domain III 1335 1403 IPR041095 -
Lapu5g01240 1691 SUPERFAMILY EF-G C-terminal domain-like 472 548 IPR035647 -
Lapu5g01240 1691 FunFam Translation elongation factor 2 1191 1332 - -
Lapu5g01240 1691 FunFam Elongation factor 2 210 314 - -
Lapu5g01240 1691 SUPERFAMILY EF-G C-terminal domain-like 715 822 IPR035647 -
Lapu5g01240 1691 CDD eEF2_snRNP_like_C 1575 1653 - -
Lapu5g01240 1691 CDD EF2 8 218 - -
Lapu5g01240 1691 FunFam Elongation factor 2 1070 1174 - -
Lapu5g01240 1691 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 332 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 CDD EF2_snRNP_III 475 547 - -
Lapu5g01240 1691 Pfam Elongation factor G C-terminus 712 799 IPR000640 -
Lapu5g01240 1691 Pfam Elongation factor G C-terminus 1572 1658 IPR000640 -
Lapu5g01240 1691 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 823 - -
Lapu5g01240 1691 NCBIfam small GTP-binding protein domain 8 163 IPR005225 GO:0005525
Lapu5g01240 1691 NCBIfam small GTP-binding protein domain 868 1020 IPR005225 GO:0005525
Lapu5g01240 1691 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 906 921 IPR031157 -
Lapu5g01240 1691 Pfam Elongation factor Tu domain 2 382 455 IPR004161 GO:0005525
Lapu5g01240 1691 Pfam Elongation factor Tu domain 2 1241 1315 IPR004161 GO:0005525
Lapu5g01240 1691 SMART EFG_IV_2 593 710 IPR005517 GO:0005525
Lapu5g01240 1691 SMART EFG_IV_2 1448 1570 IPR005517 GO:0005525
Lapu5g01240 1691 Gene3D Translation factors 1191 1332 - -
Lapu5g01240 1691 Gene3D Translation factors 331 472 - -
Lapu5g01240 1691 FunFam Translation elongation factor 2 1334 1411 - -
Lapu5g01240 1691 SMART EFG_C_a 712 801 IPR000640 -
Lapu5g01240 1691 SMART EFG_C_a 1572 1661 IPR000640 -
Lapu5g01240 1691 Pfam Elongation factor Tu GTP binding domain 5 330 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 Pfam Elongation factor Tu GTP binding domain 865 1190 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 CDD aeEF2_snRNP_like_IV 1407 1579 - -
Lapu5g01240 1691 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1333 1411 - -
Lapu5g01240 1691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 329 IPR027417 -
Lapu5g01240 1691 Gene3D - 851 1085 IPR027417 -
Lapu5g01240 1691 Pfam Elongation factor G, domain IV 598 709 IPR005517 GO:0005525
Lapu5g01240 1691 Pfam Elongation factor G, domain IV 1461 1570 IPR005517 GO:0005525
Lapu5g01240 1691 SUPERFAMILY EF-G C-terminal domain-like 1332 1408 IPR035647 -
Lapu5g01240 1691 Gene3D - 708 817 - -
Lapu5g01240 1691 FunFam Translation elongation factor 2 1 225 - -
Lapu5g01240 1691 SUPERFAMILY Ribosomal protein S5 domain 2-like 550 714 IPR020568 -
Lapu5g01240 1691 PRINTS GTP-binding elongation factor signature 913 921 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 PRINTS GTP-binding elongation factor signature 949 959 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 PRINTS GTP-binding elongation factor signature 965 976 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 PRINTS GTP-binding elongation factor signature 1001 1010 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 PRINTS GTP-binding elongation factor signature 869 882 IPR000795 GO:0003924|GO:0005525
Lapu5g01240 1691 FunFam Translation elongation factor 2 474 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01240 Lapu-Chr5 24939515 24948369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01240 1 826 Eukaryotic Initiation Factors Gene Family AT1G56070 93.341 0.0 1624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01240 K03234 - gmx:100788357 1632.85