Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01232 ATGGCGAAACCTGGGCGAGGTCGTCGCTCTCCCTCCGGTTCAGTTTCTGCTGCCTCTTCCTCTCGTTCCTCATCCCCCTCCTCCTCTCGTTCCTCTCGCTCTCGCTCCATCTCTCCCTCGCGCTCCAGATCCTTCTCATCCTCCTCCTCTCCCTCCCGCAGTTCCCGTAGCCGCAGCCCTCCTCCTCAGAGGCACAGAAGTCCCGCCGAAGCAGCTAGGCGTGGTCGGTCTCCTCCACCTCAGTCAAAGAGAGCTTCGCCTCCCCCAAGGAAGCCTTCTCCTGTACGAGAATCACTTGTTCTTCATGTAGAAAAGCTCAGCAGAAATGTCAATGAGGGTCATTTGAAGGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAACTGTCAATCTTCCAAAGGGATATGGATATGTGCAGTTCAAGACAAGGGAGGATGCTGAAAAAGCATTATTGTTCATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTCACTCTACCTCCTAGGCAGAAAGTGTCACCCCCCCCAAAGGCTTCTGTTGTTGCTCCAAAGAGAGACACCCCCAGGACTGATAATGCTAGTGCAGATGTTGACAAGGATGGGCCAAAGCGTCCGAGAGAATCTCCTCGAAGAAAGCCTCCCTCACCACGGAGAAGATCTCCTATACCTCGAAGAGCTGGATCTCCAAGGCGACCAGATTCTCCTCGCCGCCGTGCAGATTCTCCTGTTCGTCGCCGGTTAGACTCTCCTTATCGTCGTGGAGGAGACACTCCTCCTAGGAGGCGGCCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGGCGGAGACGTTCACCTCCTCCTCCTCCTCGGCGCCGATCACCACCACCTAGAAGAGCTCGCAGTCCTCCTAGAAGGTCTCCAATTGGTCGTAGGCGCACTCGCTCTCCAATACGTAGGTCAGCACGTTCACGGTCAAGGTCTTTCTCTCCTCGCAGAGGTAGGCCACCTGTTAGGCGTGGGAGGTCATCATCCTACTCTGATTCACCAAGTCCACGGAAGGTTTCCCGGAGATCAAAGAGTCGTAGCCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAATAGTAGCAGCAGCAGTTCACCACCACCAGCTCGCAAACCATAG 1236 0.5453 MAKPGRGRRSPSGSVSAASSSRSSSPSSSRSSRSRSISPSRSRSFSSSSSPSRSSRSRSPPPQRHRSPAEAARRGRSPPPQSKRASPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTREDAEKALLFMDGAQIDGNVIKARFTLPPRQKVSPPPKASVVAPKRDTPRTDNASADVDKDGPKRPRESPRRKPPSPRRRSPIPRRAGSPRRPDSPRRRADSPVRRRLDSPYRRGGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRMRGSPGRRRSPPPPPRRRSPPPRRARSPPRRSPIGRRRTRSPIRRSARSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01232 411 MobiDBLite consensus disorder prediction 220 235 - -
Lapu5g01232 411 MobiDBLite consensus disorder prediction 291 362 - -
Lapu5g01232 411 MobiDBLite consensus disorder prediction 12 62 - -
Lapu5g01232 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 177 IPR000504 GO:0003723
Lapu5g01232 411 MobiDBLite consensus disorder prediction 199 219 - -
Lapu5g01232 411 FunFam Serine/arginine-rich splicing factor SR45 3 184 - -
Lapu5g01232 411 SUPERFAMILY RNA-binding domain, RBD 86 182 IPR035979 GO:0003676
Lapu5g01232 411 MobiDBLite consensus disorder prediction 176 411 - -
Lapu5g01232 411 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 262 381 - -
Lapu5g01232 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Lapu5g01232 411 SMART rrm1_1 100 173 IPR000504 GO:0003723
Lapu5g01232 411 MobiDBLite consensus disorder prediction 239 269 - -
Lapu5g01232 411 CDD RRM_RNPS1 101 173 IPR034201 -
Lapu5g01232 411 MobiDBLite consensus disorder prediction 1 97 - -
Lapu5g01232 411 Gene3D - 6 183 IPR012677 -
Lapu5g01232 411 MobiDBLite consensus disorder prediction 391 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01232 Lapu-Chr5 24827586 24833361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01232 101 174 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 1.06e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01232 K14325 - gmx:100783566 278.87