Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01224 ATGGATTCAAAACCTAAGGCTGAATCTGAATTCAGTGTGCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCCTTGGCGAAGGAGTTTTTTCCTTCATCGTATTCTCCCAATCATGATCATCGCCTTCAAGGCTTTAATCAGCTCTCACCATCCCACTTTCTGGTCAACTCTAAGCCTTTTGCTAATGAGAATTACCCAAACAATCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGAAGGAGGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATACGTTTCTGATATTGATCAACATGTTACTGAGGAGCGGCTTGCAGCCTTATTCAGCAGTTGTGGACAAGTAATTGATTGCCGAATTTGCGGTGACCCACATTCAGTTCTCCGTTTTGCTTTTGTCGAGTTTGCTGATGATTATGGCGCTAGAACAGCTTTAAACCTTGGTGGTACTGTGCTGGGATACTATCCAGTGAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACTTTCCTCCCTAGGGTACGAATACTTTCTGATGCTTTATATCCATGGACATGTCAGATGATGAGCGCGAAATGTGTGCCCGGACTGTCTATTGTACAAATATTGACAAGAAGGTATATTATTACTATTCAGGAAAAGACAGATGTTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCTGCTTGTGGTGAGGTTACGCGCCTGAGGCTTTTGGGAGACCATGTGCATTCAACTCGAATTGCTTTTGTGGAATTCGCAATGGTTATGGATGAGTTAGAGGAACATTATCGTGACTGGCACTTTTTTCTTACTGAGCAGGCTGAAAGTGCCATTATTGCACTTAACTGTAGTGGGATGCTCTTGGGAACCCAGCCTATAAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCACTCGTCCAGCATCCCATTAA 978 0.4284 MDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHRLQGFNQLSPSHFLVNSKPFANENYPNNRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADDYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRVRILSDALYPWTCQMMSAKCVPGLSIVQILTRRYIITIQEKTDVSQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMVMDELEEHYRDWHFFLTEQAESAIIALNCSGMLLGTQPIRVSPSKTPVRPRVTRPASH* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01224 325 SMART rrm1_1 99 169 IPR000504 GO:0003723
Lapu5g01224 325 SMART rrm1_1 220 309 IPR000504 GO:0003723
Lapu5g01224 325 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 162 IPR000504 GO:0003723
Lapu5g01224 325 MobiDBLite consensus disorder prediction 60 89 - -
Lapu5g01224 325 FunFam Polyadenylate-binding protein-interacting protein 11 63 175 - -
Lapu5g01224 325 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 19 319 - -
Lapu5g01224 325 SUPERFAMILY RNA-binding domain, RBD 98 266 IPR035979 GO:0003676
Lapu5g01224 325 CDD RRM1_CID8_like 96 175 IPR034823 -
Lapu5g01224 325 Gene3D - 57 174 IPR012677 -
Lapu5g01224 325 Gene3D - 226 319 IPR012677 -
Lapu5g01224 325 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 173 IPR000504 GO:0003723
Lapu5g01224 325 Pfam Ataxin-2 C-terminal region 19 34 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01224 Lapu-Chr5 24658820 24665562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01224 95 170 Eukaryotic Initiation Factors Gene Family AT1G34140 30.769 2.71e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01224 - - gmx:100818291 460.299