Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01158 ATGAGGAATTCCTTGATTATAGCCTTCTCCATAACTATATGCTTCATCGCTTTTGTGATCTCCAAGATTGTTATTTCAGTCCTCCTCTACAAAAGATGGAGAAGAAAACAGATGATTCATGAAGAAGGTTATCCAGGAGGGAAGATAGTAATATTTAGATCTTCAGTGCTTAAATCTCTCGCAGCTGATGCGATCTTAAAGAAGACACAGAAACTGGACAACAAGGACATCATTGGGTCAGGTGGTTATGGTGTGGTTTATGGACTAAAACTAGATGAATCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTGCAGAGAGAGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGACATAAAACACCGCAACATTGTGACCCTTCATGGATATTACACTGCACAACACTACAATCTTCTCATATATGAGCTAATGCCCCATGGAAGTTTGGACTCATTTTTGCATGGGAGATCAAGGGACAAGAAGGTTTTGGACTGGCCAACCAGATATAGAATAGCAGCAGGTGCAGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATACACAGAGACATCAAGTCAAGTAACATATTGTTGGACGAAAATATGGATGCCCGAGTTTCTGATTTTGGATTAGCCACTTTGATGCAACCAAATAAAACTCATGTCTCGACGCTAGTGGCTGGAACTTTTGGATACTTGGCGCCTGAATATTTTGATACAGGAAGAGCGACGCTCAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAGAAACCCAGTGATGAAGCATTTATGGAAGAGGGAACCATGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGAGAAAAAGGAGGAGTTAGTCCTTGATAGTAGCTTAGGATATTGTTCAATGCAAGAGGTAAATAAGGTGTTCAACATTGCAATGATGTGTCTTGAACCAGATCCTTTGAAGAGGCCAACCATGTGTGATGTTGTCAATTTGCTTGACCAAACAGAACTAGATAAACTTGTTACAGCATCCTGA 1065 0.4094 MRNSLIIAFSITICFIAFVISKIVISVLLYKRWRRKQMIHEEGYPGGKIVIFRSSVLKSLAADAILKKTQKLDNKDIIGSGGYGVVYGLKLDESTALAVKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYTAQHYNLLIYELMPHGSLDSFLHGRSRDKKVLDWPTRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDARVSDFGLATLMQPNKTHVSTLVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTMLVTWVKAVVREKKEELVLDSSLGYCSMQEVNKVFNIAMMCLEPDPLKRPTMCDVVNLLDQTELDKLVTAS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01158 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 11 346 - -
Lapu5g01158 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lapu5g01158 354 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Lapu5g01158 354 Gene3D Phosphorylase Kinase; domain 1 36 147 - -
Lapu5g01158 354 SMART serkin_6 72 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01158 354 Gene3D Transferase(Phosphotransferase) domain 1 148 352 - -
Lapu5g01158 354 ProSiteProfiles Protein kinase domain profile. 72 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01158 354 SUPERFAMILY Protein kinase-like (PK-like) 56 342 IPR011009 -
Lapu5g01158 354 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 148 353 - -
Lapu5g01158 354 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01158 354 FunFam Receptor-like serine/threonine-protein kinase 43 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01158 Lapu-Chr5 23538017 23540255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01158 5 344 Receptor kinase-like Gene Family AT2G35620 44.606 1.76e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lapu5g01158 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01158 - - ahf:112703495 558.91