Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01134 ATGAAGATTCAGTGCAACGTCTGTGAGGCTGCGGAGGCCAAGGTTCTGTGTTGTGCTGACGAGGCTGCGCTGTGTTGGGAGTGTGATGAGAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGAAGCATTAGGCTATTTTTTCTGTCTAGAGGATCGGGCTCTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGGGCATCCTCAACGTCTTTGAAGTCAGATTCTGGGGAGAAAATTTCAGATACAAAGTCATCTTCTATCTCTAGAAAGGTTTCAACAATGCCTCAGCCATCAGATTACAATGAATTGTTACCTATCGAAGTTGGAGGAGTTGAGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGCTGGAAATATCTCACAGTGGACAATAGATGAATTTATTGGCCTAAACGATTTCAGTCAGAATTATGATTACATGGAAGGATCATCAAGGGTGAAAATAGGACAGGGATGGAGCCAATCATGTCTTCGGAAAGCTGACGGTGGTAAATTAGGGGACTCTGACTCTCCTGTTTTACGATCCGGTGACAAGGAAATGGAGGAGGAGGAGGAGGACTACCTGGAACACGTTCCAGATTCGTCATGGACAGTTCCACAGATCCCTTCCCCTCCCACAGCTTCTGGGTTACACTGGCCAAAAGACCCTCAATATTCATCTGATACTCTTCTGTTTGTTCCTGACATAAGCTTTTCTCACATGCAACACTCTCAGATCAGTAGTATTTTTTCTAGACGCCGGAGGCAGCTTTGA 927 0.4585 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKISDTKSSSISRKVSTMPQPSDYNELLPIEVGGVEGFPPAKESFGGGSTAGNISQWTIDEFIGLNDFSQNYDYMEGSSRVKIGQGWSQSCLRKADGGKLGDSDSPVLRSGDKEMEEEEEDYLEHVPDSSWTVPQIPSPPTASGLHWPKDPQYSSDTLLFVPDISFSHMQHSQISSIFSRRRRQL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01134 308 Gene3D Classic Zinc Finger 1 92 - -
Lapu5g01134 308 MobiDBLite consensus disorder prediction 217 272 - -
Lapu5g01134 308 FunFam B-box zinc finger protein 22 1 93 - -
Lapu5g01134 308 CDD Bbox1_BBX-like 5 47 - -
Lapu5g01134 308 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 289 - -
Lapu5g01134 308 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu5g01134 308 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lapu5g01134 308 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu5g01134 308 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lapu5g01134 308 MobiDBLite consensus disorder prediction 110 146 - -
Lapu5g01134 308 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Lapu5g01134 308 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01134 Lapu-Chr5 23095665 23099693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01134 1 306 C2C2-CO-like Transcription Factor Family AT1G78600 48.036 3.95e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu5g01134 zf-B_box 3.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01134 - - gmx:100790959 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01134 5 23095665 23099693 Lapu5g01134 5 23095665 23099693 ECH