Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01131 ATGTTTGTTCTGAATTGTCAATGGCACGGTGTTGCTTCTTGGACTTGGGATGCTCAGGATGAAACATGTGGGATCTGTAGAATGGCTTTTGATGGATGTTGTCCTGACTGTAAACTTCCTGGGGATGACTGTCCGCTGATTTGGGGTGTATGCAATCATGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAAACATCACAAGCTCATTGTCCCATGTGCCGTCGTGAATGGCAGTTTAAAGGATAA 255 0.4392 MFVLNCQWHGVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGVCNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01131 84 FunFam Anaphase-promoting complex subunit 11 1 84 - -
Lapu5g01131 84 ProSiteProfiles Zinc finger RING-type profile. 34 77 IPR001841 -
Lapu5g01131 84 PANTHER RING BOX 7 83 - -
Lapu5g01131 84 CDD RING-H2_APC11 20 82 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Lapu5g01131 84 SUPERFAMILY RING/U-box 7 83 - -
Lapu5g01131 84 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 84 IPR013083 -
Lapu5g01131 84 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 5 83 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01131 Lapu-Chr5 23053251 23054882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01131 34 77 C3H Transcription Factor Family AT1G72220 41.304 2.04e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01131 K03358 - oeu:111382202 189.889