Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01126 ATGGCTAAAGGGGTTGGAATTGGGATAGCAGTTGCTACAATTGTATTTGTCATCCTTATTGCACTTGCCTGGAGACTTCATATTGGGAAAAGAAATTCATTGGCAAAAGATTTAAAGCATTTAAATTTGCAAATGGGTTTATTTTCAATGCGTCAAATCAAAGTTGCAACGAATAACTTTGATATTTCAAATAAGATTGGAGAAGGAGGCTTTGGCCCAGTCTACAAGGGTACTTTATCAGACGGCACAATAATAGCAGTTAAGATGCTTTCATCTAAGTCTAAGCAAGGGAATCGTGAATTTATAAATGAGATAGGGTTGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTATGGTTGTTGTGTTGAGGGAAATCAGTTGTTGCTGGTATACGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTAGAAACGGAGAATCTTGTTTGCAGTTGGATTGGCCAACCAGGTATAGGATTTGTGTTGGTATTGCTAGAGGTTTGGCTTTCCTACACGAAGAATCAAGATTAAAAGTTGTTCATAGGGACATTAAAGCTACTAATGTGTTGTTAGACAAAGACTTGAACCCAAAGATATCTGATTTTGGTCTTGCAAAGCTTGATGATGAGGACAATACTCACATTAGCACAAGAATAGCCGGGACTTATGGATATATGGCTCCAGAGTATGCCATGCATGGTTATTTAACTGATAAAGCAGATGTTTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACCGGAAAGAGCAATACCGTCCCTCGACCCAAGCAAGAAGCATTGCACCTTTTAGAATGGGCAAATTTACTGAAAGAGAAAGGTAATCTGATGGAGCTAGTTGATAGAAGGTTAGGATCAAATTTCAATGAAGAAGAGGCAATGACGATGATAAAAGTGGGTCTTCTGTGCACAAATGCCACTTCAAACCTTAGGCCTACCATGTCATCTGTGCTTAGCATGCTTGAAGGAAAAACTGTGATTCCGGATTTTATTTCAAATTCATCTGAAATAATGGATGAAATGAAGCTAGAGGCTATGAGACAATATTACTCTCAAATGGAAGAAAATGAGAGAAGTGAGACAAATACAAATCATAGTTCATCAAAAGATGGGCCATGGACTGCTTCATCTTCATCAGCTGCAGACCTATATCCTCTCCACATTGATTCTTCTTATTGGGAGAAAAGAAATTAA 1224 0.3775 MAKGVGIGIAVATIVFVILIALAWRLHIGKRNSLAKDLKHLNLQMGLFSMRQIKVATNNFDISNKIGEGGFGPVYKGTLSDGTIIAVKMLSSKSKQGNREFINEIGLISALQHPCLVKLYGCCVEGNQLLLVYEYMENNSLAHALFRNGESCLQLDWPTRYRICVGIARGLAFLHEESRLKVVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKSNTVPRPKQEALHLLEWANLLKEKGNLMELVDRRLGSNFNEEEAMTMIKVGLLCTNATSNLRPTMSSVLSMLEGKTVIPDFISNSSEIMDEMKLEAMRQYYSQMEENERSETNTNHSSSKDGPWTASSSSAADLYPLHIDSSYWEKRN* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01126 407 Gene3D Phosphorylase Kinase; domain 1 24 135 - -
Lapu5g01126 407 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 29 135 - -
Lapu5g01126 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Lapu5g01126 407 SMART serkin_6 60 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01126 407 Gene3D Transferase(Phosphotransferase) domain 1 136 345 - -
Lapu5g01126 407 CDD STKc_IRAK 66 333 - -
Lapu5g01126 407 Pfam Protein tyrosine and serine/threonine kinase 62 330 IPR001245 GO:0004672|GO:0006468
Lapu5g01126 407 MobiDBLite consensus disorder prediction 363 388 - -
Lapu5g01126 407 ProSiteProfiles Protein kinase domain profile. 60 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01126 407 FunFam Putative LRR receptor-like serine/threonine-protein kinase 136 343 - -
Lapu5g01126 407 SUPERFAMILY Protein kinase-like (PK-like) 44 351 IPR011009 -
Lapu5g01126 407 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 7 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01126 Lapu-Chr5 22946655 22949593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01126 5 392 Receptor kinase-like Gene Family AT1G07650 61.954 5.54e-168 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g01126 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01126 - - vum:124835551 727.243