Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01123 ATGATTCAAAGCAATTCAATTCAAGAATCAGCAAACATGAAGACAACCACTTTCTCTGAATTTCTGCTCCTTTCACTACTTGCCTCTTGCTTGGCATCACTTCATGGATCCACTACTGACCCAGATGAAGTGCAAGCTCTTAAAGATATAGCTAAAACACTTGGAAAAAATGATTGGGACTTCAAGGTAGATCCATGCAATCGCAGTGGAAATCCAAAGTGGACTTTGCCAGAACCTTATGAATCAAAACAAGTTTGGAAAAATAATGTCACCTGCAATTGCTCTATTGACAACTTCTGCCATCTTATTAGGATTGATGTGACAGGGCAAAGTCTTCAAGGCAGTCTCCCACGAGAACTGGTTGGGTTACCCTACATTCAATATATTGACTTCTCCCGCAATTACCTTAGTGGGACAGTTCCTAAAGAATGGGCAACCTTAAAATTTCTCAACACCATTAATCTACTGGGAAATCGACTAAGTGGTCCATTCCCTGAAGTGCTGACACAAATCACCACTCTTCAATCTTTGAGTCTGGAGTCCAATAATTTCTATGGAAATCTTCCTCCACAACTTGGGTCTCTTCCTCAGTTAGCAAAATTGCAGCTTACCTCGAACAATTTCACAGGGGAGTGGCCTCAAACATTTTCCAATCTTACTTCATTGGTAGATTTACGTCTTGGCGGTAATCAATTTTCTGGAAAGATACCTAATTTTATTGAAAGATGGACAAAGCTCCAAATATTAGATATTACAGGGAGTGGCTTAGGAGGACCATTTCCATCTGGATTTTCATTCCCCCAAGGTTTAATCAGATTGCAAATCACTGACTTAAATGGACCCGAGTCAACTTTTCCATTAGTTAATTTAACACAATTGGAAAGATTGATATTAAGGAGTTGCAATATTAAGGACAAAATACCAGACTATATTGGAGGGATGAGAAGTTTGAAAATTTTGGATCTCAGCTATAACAAATTAAGTGGAAAAATTCCAAACATTGAAGGACTAATAAACGCCACTACTATATATTTAACTGGAAACTTTCTCACTGGATCAAGAAATGAGTGGAGACTACCTTACAAGAGTAAGACCATAGATCTTTCATACAACAATTTCAGCAACGATAATGAAGGAGCACCACCATGTGAAGATAAACAAATGAATCTTTTTGCCAGCTTTTCAAGTGACCATAACTCAGGACCTGTTTCTTGTATAACGACCAAGTGTCTTAAGTCGTTTCACTCCTTCCATATAAATTGTGGTGGAAATGATGAGATAACCATTGGAGATACAACATATTATCGTGATTTATCCGTTAAATCCGAAGTATCAATATCTTATTCGCCTATGTCAAATTGGGCAATTAGCAATACTGGTCACTTATTAGACACTGATGCATATGGCTATGAAGTAAACAATATATCAAGGCTTTCTATCTCTGGTGCTGAGGCTAAACTATATACGACTGCAAGAATTTCTCCTCTTTCTTTAACTTACTATGGATTTTGCCTGCTAAATGGGAATTACACAGTAAGACTCCACTTTGCTGAGATAATGTTCACTCATGATAACACATACAGAAGCCTAGGCAGACGTGTCTTTGATGTTTACATTCAGGGAAAACGAGTATTGAAGGATTTCAATATAGCAAATAAAGCACAGGGGGCTGAAAAGGCACATGTAGAAAATTTTACTGCTTTTGTGAGTAACACAACCTTAGAGATTCGTTTCTCTTGGGCAGGAAAAGGGTCAACTGGTATTCCACAAAGATCAGTATATGGCCCTCTTATTTCAGCAATATCTGTCACTTCTGATGACTTTAAACCCCCATCACCACCAGGACATACACGGATCGTGGTTATCATTGTTCTTCCAACATCAATTATTCTCATCTTGGTAGTTGGGATACTTTGGTGGAGATTTTGCCTTAAAAATAATAATTCATTAGCTGAAGAATTCAAAGATTTAGATTTGAAAACTGGTGTATTTACCATTCGTCAAATCAAAGTAGCGACAAATAACTTCAATATTTCCAACAAGATTGGAGAAGGAGGTTTTGGTCCAGTATACAAGGGCACTTTGTGGGATGGAACAATGATAGCAGTCAAGCAACTTTCGTCTAAATCAAAACAAGGAAACCGTGAGTTCATAAATGAGATAGGCTTGATCTCAGCATTGCAACACCCTCATCTGGTTAAACTTTATGGTTGTTGTGTTGAGGGAGATCAACTATTGCTGGTATATGAATATTTGGAAAATAATAGCCTAGCACGTGCTTTGTTTGGTAATGAAGAACTCTGTTTAAAATTAAATTGGCCAACAAGGCAGAAGATCTGCATAGGTATTGCTAGAGGTTTGGCTTTCCTACATGAAGAGTCAAGATTCAAAATTGTTCACAGGGACATCAAAGCCACTAATGTGTTACTTGACAAAGAGCTAAATCCAAAAATATCTGATTTTGGTTTAGCTAAACTTGATGAGGAAGACAACACTCATATAAGCACTCGAATAGCTGGGACTTATGGGTATATGGCTCCTGAGTATGCAATGCATGGCTATTTGACTGACAAAGCTGATGTCTATAGTTTTGGAATTGTTGCTTTGGAAATTGTTAGTGGAAAGAGTAACACAATTCACCGATCAAAACAGGAATCAATATGTCTTCTTGATTCGGCACGTATGATGAAAGGAGAAGGTAAATTAATGGAGTTAGTTGATGAAAGACTAGGTTCAAATTTCAATGAAGAAGAAGTAATGGTGATGATTAACGTGGCTCTTCTGTGCACCAATGCCACTTCCAATCTTAGACCCACCATGTCTTCAGTTGTAAGCATGCTTGAAGGCAAAAGTCTTGTTTCAGAATTTGTTTCAAATACAAGTGAAGTAATGGATGAAATGAAGTTAGAAGCAATAAGACAATACTATAATCAAATAGCACAAAGGGAGGAACCTGTGACACAAAGTCAAAGTTTATCAATTGAATGGCCTTCATCTTCATCTGCTGTTGATCTCTATCCCATCGAACTTAATTCATCATACTTGGAGACAAGAAGATTAAAAGATTCTATATAA 3075 0.374 MIQSNSIQESANMKTTTFSEFLLLSLLASCLASLHGSTTDPDEVQALKDIAKTLGKNDWDFKVDPCNRSGNPKWTLPEPYESKQVWKNNVTCNCSIDNFCHLIRIDVTGQSLQGSLPRELVGLPYIQYIDFSRNYLSGTVPKEWATLKFLNTINLLGNRLSGPFPEVLTQITTLQSLSLESNNFYGNLPPQLGSLPQLAKLQLTSNNFTGEWPQTFSNLTSLVDLRLGGNQFSGKIPNFIERWTKLQILDITGSGLGGPFPSGFSFPQGLIRLQITDLNGPESTFPLVNLTQLERLILRSCNIKDKIPDYIGGMRSLKILDLSYNKLSGKIPNIEGLINATTIYLTGNFLTGSRNEWRLPYKSKTIDLSYNNFSNDNEGAPPCEDKQMNLFASFSSDHNSGPVSCITTKCLKSFHSFHINCGGNDEITIGDTTYYRDLSVKSEVSISYSPMSNWAISNTGHLLDTDAYGYEVNNISRLSISGAEAKLYTTARISPLSLTYYGFCLLNGNYTVRLHFAEIMFTHDNTYRSLGRRVFDVYIQGKRVLKDFNIANKAQGAEKAHVENFTAFVSNTTLEIRFSWAGKGSTGIPQRSVYGPLISAISVTSDDFKPPSPPGHTRIVVIIVLPTSIILILVVGILWWRFCLKNNNSLAEEFKDLDLKTGVFTIRQIKVATNNFNISNKIGEGGFGPVYKGTLWDGTMIAVKQLSSKSKQGNREFINEIGLISALQHPHLVKLYGCCVEGDQLLLVYEYLENNSLARALFGNEELCLKLNWPTRQKICIGIARGLAFLHEESRFKIVHRDIKATNVLLDKELNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKSNTIHRSKQESICLLDSARMMKGEGKLMELVDERLGSNFNEEEVMVMINVALLCTNATSNLRPTMSSVVSMLEGKSLVSEFVSNTSEVMDEMKLEAIRQYYNQIAQREEPVTQSQSLSIEWPSSSSAVDLYPIELNSSYLETRRLKDSI* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01123 1024 Pfam Leucine Rich Repeat 316 333 IPR001611 GO:0005515
Lapu5g01123 1024 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 645 751 - -
Lapu5g01123 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Lapu5g01123 1024 Gene3D - 415 607 - -
Lapu5g01123 1024 Gene3D Ribonuclease Inhibitor 71 212 IPR032675 -
Lapu5g01123 1024 ProSiteProfiles Leucine-rich repeat profile. 316 338 IPR001611 GO:0005515
Lapu5g01123 1024 CDD STKc_IRAK 682 949 - -
Lapu5g01123 1024 ProSiteProfiles Protein kinase domain profile. 676 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01123 1024 FunFam Leucine-rich repeat receptor protein kinase EMS1 164 263 - -
Lapu5g01123 1024 Gene3D Transferase(Phosphotransferase) domain 1 752 969 - -
Lapu5g01123 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase 752 959 - -
Lapu5g01123 1024 Gene3D Ribonuclease Inhibitor 213 389 IPR032675 -
Lapu5g01123 1024 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515
Lapu5g01123 1024 Pfam Protein tyrosine and serine/threonine kinase 677 947 IPR001245 GO:0004672|GO:0006468
Lapu5g01123 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 30 980 - -
Lapu5g01123 1024 SUPERFAMILY L domain-like 89 355 - -
Lapu5g01123 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 606 - -
Lapu5g01123 1024 Pfam Malectin domain 416 601 IPR021720 -
Lapu5g01123 1024 SMART serkin_6 676 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01123 1024 Gene3D Phosphorylase Kinase; domain 1 641 751 - -
Lapu5g01123 1024 SUPERFAMILY Protein kinase-like (PK-like) 659 955 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01123 Lapu-Chr5 22897879 22922331 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01123 37 1002 Receptor kinase-like Gene Family AT1G53420 51.577 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g01123 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01123 - - vvi:100255520 1131.32