Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01118 ATGATGCGGTGTGTGATGTTTTCAAGCTCCAGACATGTCACCATGGTCTTCACTATTTGCTTTCTGGCTTTGAATCACTTCCAACACTTTGGATCTAATGCTCAACTCATACCAGAAGATGAAGTTAAAATACTACAAACAATATCAGACAAGGTAGAAAACTTGAATTGGAAAGTTACACAACGTTCCTGCAAAGGGGATAGAGGGTTTGGTAACAGAAAGATTTCAAGGGATGAGGAGCAAAGCATAAGGAATGTCACTTGCGATTGTTCTTTCTACAATCGCACTATTTGCCATGTGACATCCATTGCACTCAAGGGTATCGATGTATCTGGACCTTTACCCGATGAATTTGGAAATCTAACTCGACTGAAAATACTTGATCTCACTCGGAATTATTTCAACGGCTCAATCCCAAAAAGCTTTGGACGCCTCTCATCAGTTGTAGTTCTGTCACTTCTCGGAAATCGACTTACTGGTTCAATTCCTTCAGAAATTAGTGATATGACTAGTCTGCAAGAACTGAACTTGGAAGATAATCAACTAGAAGGACATCTTCCCCCGAGCCTTGGAAAAATGAGCAACTTGCTGAGATTACTTCTGTCTTCAAATAATTTCACAGGGACAATACCAGAAGCATATGGAAAACTAAAGAATCTACTTCAGTTTAGGATCGATGGGAGCACTTTGTCTGGGAAGATACCCAGTTTTATTGGGAACTGGACCAAACTTGATAGACTGGATTTGCAGGGCACATCCTTGGAAGGTCCAATTCCTTCTGTCATATCTGAATTGATCTATTTGACAGAATTGAGAATATCTGATTTGAAGGGACCAACCATGACATTTCCTAATCTGACGAATTTGAAAATCTTGCAAAGACTAGAATTGAGAAATTGCTTAATCACTGGTCAAATTCCTCGTTACATTGGAGAAATGCAAAGTTTAAAAACTCTAGATCTGAGCTCCAACATGCTGACTGGTCCAATCCCAGATTCATTTCAGGACATGGAAAAAATAAATTACTTGTTTCTGACTAACAATTCTCTAAGTGGACGAATACCTGCTTGGATACAAGACTTCAAACAGAACATTGATTTATCTTTGAACAATTTTAGTGAGAGTTTTTCAAGTGATTGCCAGGTCTTGGATGTGAACTTAGCTTCGAGCCTCACTCCCTCAGCAAACACTTCATCGTCTTGTTTGAAGATTGGCCAACCTTGTTCTAGAAAACCCCGGTCTCATTCCCTGTTCATAAACTGTGGAGGACCTGAAATAGAGTCTGAGGGCAATGAATATGAAGCCGACCAGAATCTACGTGGCATATCAAACTTTGTTTTTGGTGATAATGGCAAATGGGCATATAGCAGCACTGGAGTATATCTAGGAAGGGATAAGGCTGATTATGTAGCAAACAATCAGTTTAATCTGAATATTAATGGCTCAGAATACTACCAAACAGCCCGCATGGCCCCTCTCTACCTCAATTATTATGGCCTCTGTATGCTGAATGGCAATTATAAAGTGAAACTTCATTTTGCTGAGATAACATTCTCTGATCACAATTCATTTACCAGCCTTGGAAAGCGTGTATTTGATGTTTCAATCCAAGGTTTCAAATATTTGAAAGATTTTAACATTGTGAAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAGGGAGTTTAATGTGAATGTTACCCACAACACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCATTCCTGTAAGAGGTATATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTCCTTCACATGGGCTATCTCCTGGAGCAATTGCTGGAATTGTGGTTGGGACATGTGTGTTCATCATATTGATAATCTTTGTACTTTGGAAGATGGGTTTCCTATGTGGGAAACATGAAACAGACCAAGAACTTCTAGGTTTGAAGACGGGTTATTTCAGTTTAAGACAGATTAAAGCTGCTACTGATAACTTTGATCCAGCAAATAAGATAGGGGAAGGAGGCTTTGGACCAGTATACAAGGGTGTACTGTCAGACGGTGCTGTGATTGCTGTGAAGCAACTTTCCTCCAAATCAAAGCAAGGGAATCGCGAATTCATCAATGAAATAGGCATGATATCTGCCTTGCAGCATCCAAATCTTGTGAAACTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTTCTAGTTTATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAACATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAGATTTGTGTGGGGATTGCAAAGGGATTAGCATATCTCCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGATATTAAAGCAACCAATGTCTTACTCGATAAGCATCTGAATGCCAAAATCTCTGACTTCGGTTTAGCCAAACTTGATGAAGAAGAGAACACCCATATTAGTACAAGAATAGCTGGGACAATTGGTTACATGGCTCCAGAGTATGCCATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGGATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTGTATCTTTTGGATTGGGCCTATGTTCTTCAAGAGCAAGGAAACCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCAGAAGAAGCCATGAGAATGCTGCAGTTAGCACTGTTGTGCACCAATCCTTCTCCCACTCTTAGGCCATCTATGTCATCGGTAGTGAGCATGCTTGAGGGAAAAAGTCCAATTCAAGCACCACCAATAATCAAATGCAGTGACAATGCACAAGATGCGAGATTTAAAGCCTTTGAGTTGTTATCACACGACAGCCAAACTCATATCTCTTCTGGTTTCTCACAAGATAGTATAGAGCAAAGAAGCAAGTCAATGGGGGGACCATGGGTTGATTCCACCGTTTCTCTGACAAGTAGAACCGATCTTTGTTCAACAGATAAACTTCTTACAAGTTCGAATGACGTGTGA 3075 0.4049 MMRCVMFSSSRHVTMVFTICFLALNHFQHFGSNAQLIPEDEVKILQTISDKVENLNWKVTQRSCKGDRGFGNRKISRDEEQSIRNVTCDCSFYNRTICHVTSIALKGIDVSGPLPDEFGNLTRLKILDLTRNYFNGSIPKSFGRLSSVVVLSLLGNRLTGSIPSEISDMTSLQELNLEDNQLEGHLPPSLGKMSNLLRLLLSSNNFTGTIPEAYGKLKNLLQFRIDGSTLSGKIPSFIGNWTKLDRLDLQGTSLEGPIPSVISELIYLTELRISDLKGPTMTFPNLTNLKILQRLELRNCLITGQIPRYIGEMQSLKTLDLSSNMLTGPIPDSFQDMEKINYLFLTNNSLSGRIPAWIQDFKQNIDLSLNNFSESFSSDCQVLDVNLASSLTPSANTSSSCLKIGQPCSRKPRSHSLFINCGGPEIESEGNEYEADQNLRGISNFVFGDNGKWAYSSTGVYLGRDKADYVANNQFNLNINGSEYYQTARMAPLYLNYYGLCMLNGNYKVKLHFAEITFSDHNSFTSLGKRVFDVSIQGFKYLKDFNIVKEAGGVGKGITREFNVNVTHNTLEIHLSWAGKGTNAIPVRGIYGPLISAITVTPNFKVPSHGLSPGAIAGIVVGTCVFIILIIFVLWKMGFLCGKHETDQELLGLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKEHERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPSMSSVVSMLEGKSPIQAPPIIKCSDNAQDARFKAFELLSHDSQTHISSGFSQDSIEQRSKSMGGPWVDSTVSLTSRTDLCSTDKLLTSSNDV* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01118 1024 Gene3D Ribonuclease Inhibitor 276 401 IPR032675 -
Lapu5g01118 1024 CDD STKc_IRAK 676 943 - -
Lapu5g01118 1024 Gene3D Ribonuclease Inhibitor 203 267 IPR032675 -
Lapu5g01118 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Lapu5g01118 1024 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 414 603 - -
Lapu5g01118 1024 Gene3D - 414 603 - -
Lapu5g01118 1024 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 283 376 - -
Lapu5g01118 1024 Pfam Protein tyrosine and serine/threonine kinase 674 940 IPR001245 GO:0004672|GO:0006468
Lapu5g01118 1024 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 38 277 - -
Lapu5g01118 1024 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Lapu5g01118 1024 Pfam Leucine rich repeat 292 350 IPR001611 GO:0005515
Lapu5g01118 1024 SMART LRR_typ_2 121 145 IPR003591 -
Lapu5g01118 1024 SMART LRR_typ_2 169 193 IPR003591 -
Lapu5g01118 1024 SMART LRR_typ_2 313 336 IPR003591 -
Lapu5g01118 1024 SUPERFAMILY L domain-like 96 372 - -
Lapu5g01118 1024 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 952 - -
Lapu5g01118 1024 ProSiteProfiles Protein kinase domain profile. 670 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01118 1024 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 745 - -
Lapu5g01118 1024 MobiDBLite consensus disorder prediction 977 998 - -
Lapu5g01118 1024 SUPERFAMILY Protein kinase-like (PK-like) 655 942 IPR011009 -
Lapu5g01118 1024 Gene3D Ribonuclease Inhibitor 45 202 IPR032675 -
Lapu5g01118 1024 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 220 IPR000225 GO:0005515
Lapu5g01118 1024 Gene3D Phosphorylase Kinase; domain 1 640 745 - -
Lapu5g01118 1024 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 972 - -
Lapu5g01118 1024 Gene3D Transferase(Phosphotransferase) domain 1 746 968 - -
Lapu5g01118 1024 SMART serkin_6 670 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01118 1024 Pfam Malectin domain 417 598 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01118 Lapu-Chr5 22759946 22770828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01118 6 1008 Receptor kinase-like Gene Family AT1G53440 59.467 0.0 1181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g01118 PK_Tyr_Ser-Thr 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01118 - - gmx:121173337 1695.25