Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01108 ATGGAGAATCTGCCCTCGAATGGAAGAAAGGCAATAGAAGAAGAGCTGCTCAAAGGGCGTGACATAGCAAACCAGTTACTTGAAGTACTCGTTCACAAATCCAACACTCATCATCATCATCATCATGCAGATGTTGAAGGGTCAATGCTTCCATTTGCTGAAGATCTTGTGCGCAAGGTGCTGTGTTCTTTCACAAACACGCTTTTGCTTTTGAACACAAACGATTATTCCTCCAACGTGGCGGCTGTTATTCCTATCACTATCAAAGATGCCCCTTCGTCCGTGAAATGCCCAAACCCTCAGAACATGACCGAGCCTTGCAAGAGTTTCTTCCACCCTAGAAAAAGAAGAGGGTGCTACAAGAGAAAATCAAGTGCACCAACATGGGAGACGAACAACTCAATTCTGATGGAAGATGGCTATGTGTGGAGAAAGTATGGACAAAAGATAACAATGAATGCAAAATACCTCAGGAATTACTATAGATGCACTCACAAATATGATGAGGGTTGTCCAGCAACCAAACAGGTTCAGAGAATTCAAGAGGACCCTCCATTGTACAGGACAACATATTATGGCCAACACAGTTGCAAAGCCTCTTTAAGTACAGAGATAATGCTGGAAACAGCTTCTCCCTCTGGCTCTTCAATGTTTTTTAGCTTCAGTAACACTTTCCCATCCAAAGAACAATGCCAGATACATTCATCTTCACTATTTTCATCCACGAAAGAGTAG 735 0.4259 MENLPSNGRKAIEEELLKGRDIANQLLEVLVHKSNTHHHHHHADVEGSMLPFAEDLVRKVLCSFTNTLLLLNTNDYSSNVAAVIPITIKDAPSSVKCPNPQNMTEPCKSFFHPRKRRGCYKRKSSAPTWETNNSILMEDGYVWRKYGQKITMNAKYLRNYYRCTHKYDEGCPATKQVQRIQEDPPLYRTTYYGQHSCKASLSTEIMLETASPSGSSMFFSFSNTFPSKEQCQIHSSSLFSSTKE* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01108 244 SUPERFAMILY WRKY DNA-binding domain 133 198 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu5g01108 244 Pfam WRKY DNA -binding domain 138 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g01108 244 ProSiteProfiles WRKY domain profile. 132 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g01108 244 Gene3D WRKY domain 112 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu5g01108 244 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 223 IPR044810 GO:0003700
Lapu5g01108 244 SMART WRKY_cls 137 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01108 Lapu-Chr5 22437664 22439293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01108 12 203 WRKY Transcription Factor Family AT3G56400 36.869 1.87e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu5g01108 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01108 - - gmx:102659367 323.553