Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01093 ATGAAGAGGAACAGTTTGATGAAGGACTACACTCACAGTTGTGCCAACAAGAACCCAACAAAGGACTTCACCCATGTTGTCAACTGCTACAACAAGCAGAACCAAATGGCTAAAGAGTTGTGGGAGTGCAGCAGCAACTCTCACAGCAATGCAGATCAGGACTATGTGAATGGCTTCCCATGGCCTCCAAGATCATACACTTGTAGCTTCTGCAGAAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAGCTGAAGGTCAAGGCCATATGTTCAACCTTAACCTTGACCCTACTACAACTAACCCTAACAACTCAACCACATCTTGGTCCTTGTTACCATCATCTTCATCTTCAGCAACTCTCAAACCTGTCTCTTGCACATTACCCTTGTTTGTTTCTCCCACTTCTCCTTCACCTTCTTCTGAGTTGAAGAGATGGGTTGTTGTGGATGGCATTCTGTTGAACCCTTTGAGCTCGAAGACCCCAGAGCACTCTAAGTCAAAGATTCCAGAATCTTTATCAGCCGGGGTTGGAGAATATGATCATGCTTTTGCAAGAGAAGATGGGTGCAAAGTGTTGAAGAAAGGAGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGGTTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 726 0.4545 MKRNSLMKDYTHSCANKNPTKDFTHVVNCYNKQNQMAKELWECSSNSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPAEGQGHMFNLNLDPTTTNPNNSTTSWSLLPSSSSSATLKPVSCTLPLFVSPTSPSPSSELKRWVVVDGILLNPLSSKTPEHSKSKIPESLSAGVGEYDHAFAREDGCKVLKKGEILRMDLEIGLPRGYDLDLELRLGTTYS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01093 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Lapu5g01093 241 SMART c2h2final6 66 88 IPR013087 -
Lapu5g01093 241 Pfam C2H2-type zinc finger 66 90 - -
Lapu5g01093 241 Gene3D Classic Zinc Finger 62 107 - -
Lapu5g01093 241 MobiDBLite consensus disorder prediction 109 128 - -
Lapu5g01093 241 MobiDBLite consensus disorder prediction 96 128 - -
Lapu5g01093 241 PANTHER OS07G0101800 PROTEIN 45 238 - -
Lapu5g01093 241 SUPERFAMILY beta-beta-alpha zinc fingers 63 92 IPR036236 -
Lapu5g01093 241 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01093 Lapu-Chr5 22167596 22168321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01093 41 237 C2H2 Transcription Factor Family AT3G23130 41.206 4.64e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g01093 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01093 - - var:108333719 407.527