Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01074 ATGTTCAGCAACGAAGTAGAAGATTTATTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAGATTTTTTCAGAGGTCTTTTCTGGTGATGACATTTTTCAGTCTAGTCAGAAGTGTCTTGTTCCTGGAGCTATCAGCCTTGAACATGAATCTGCTAAAAACACATTTAAATCATTTTGCTCTAGTAACGAAAACTCAGCTGCATTGCATCCCTCGTCTTCTAGACTTACACACCATGAAGAGGGGAACATTAATGTAATTCAGCATTCCAAAGAGGCTGTTCCGGAATGTGTGCCAGAGAGTTTCATTTGTGAAGACCATAATGATGAGGATGTGAACGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCTAATTCAGAGAAAAATTTGAGTTCATCACGACTTTCAAAAGTAGCAGTTTCTAACCTGTCTTGTGCTGCTACAGGCTGCGATAGTGAACCAATTGCATTTCGTTTGGTTGAATCATCGAAACGTGGTGTGATATCTAGCTGTTATCTTTTGAACCATAACAAGTTAAATAAACAAGCTGTTAAGGATGATGTAGATGTTACAAATTTTAACACAACAGCAGATGGACATACTGCCAAAGAAGTGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAGCAAGCTTGTAGTTACAAATCCGTCAATCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCGGAATCTACTAATGTGGACATCTCAAATTCAACCTCAATGCTACCGGAAGAGGACCCTCGAACTATTCTGCAGTTTCAGATTGTTCAGTTGCTTACCATGGCAGGATGGTCTATTGAGAAGCGTCAACGGCCTAGTAGGCGTTATCCAGAGTCAGTTTATAGGACACCGAAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTAATGTGCAGAGACTATAAGGAATGGACTGATATTAGTCAATTTTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAACAAAGATGCAGTCACAAGACCCTGCTGCTATATTGGCTTATCGGTGGTGGCTTTTGGATCCTTTTGTAGTAGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGAGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGGTAGCATGTGCTCCCATTGATTCAGGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAATGTAAATGCTGTTCATCACGCCAAAATTAGAAATTCTAGAAGTCTTGATAAGCAGAGCTCAGAAAACTATCTGGAAACAAACAATATTATCGATGGACATGTACCAATGGACATGTCAGAAGAAAATAATGCATCCGGTGTGAGCTATGGCCTGGTTCATTCTCACGACTCAAGGGCTATGCAACAGTCTGAATGTAGTGAGGAAGAGGGTGGGAAAATCTTAGTCGATTCAGTATTTGGGAAAGATAACACATATTCGGTTTCTAATGTTACTCTTAGAAAGAAAATGCGAAGGAAGTGCAAAAGGGTATCTGAAATTAAACTGAGTATGTTCTACCATGGTGACATGCTAGGCTCTACTGTCACCGACCAGGTGCAGTCTCTAGATGGTGGAGCATGTGGCTTGGAAGAAGTCCAGAATTATCAAGCTGACAATGCTGGAAAGAAAAGAAGCTGCAGAAAGTTATCATCTGTCAGTACAATTCAGAGAAATATCAGGAAAACAAACTGCTCCATAACTGGAACGGATAGGTCTAGCAGATGCCAGATTAAAGATGATGATTTATTGGTGTCTGCAATATTCAGGAATAAGGACTTCGGCCCAAAGGCAATCCGGGGAAATTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAGCTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTTCCAAGGAACCCCAGTAATGGAGGGAAGTACAATAAGGACTGTAATAGGTTTTATTTGGGTGCAAGGACAATATTGTCCTGGTTGATTGACAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAATGCTAAGGATAATGTCGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATGTGTATATGTTGTGGTAAGGTGCTTACATTATCAGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGATGATAATGACAAAAATGATGATTCATGCGGGTTGTGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAACTGTCCATCTACTTTCCACGCTGCTTGCTTGTCCTCTCAGGAGATCCCAGACGGTGACTGGTACTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATATGCATGATTTATTGCAATGTTCACAGTGTGAACATAAATATCACGAGAAATGCCTGAAAGATAGAGAAACACAAGAAGTAGCAGTCTCAGACATTTGGTTTTGTGGTCAGAGTTGTCAAGAGGTGTACTCTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCATCTCATGGTCGCTTCTTAGGTGCATCCATGATGACCAGAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTTTCAATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCCCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACTGTAGCAGAGATGCCTCTAATTGCTACTTGCAGTCGGTATAGACGCCAGGGAATGTGCCGACTTCTTGTAACTGCTATCGAACAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTGGTATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACTTGATGATCTTCCCCGGGACAGTGTTTCTTGAGAAACCGTTGTACGGGAAGATGAAAAATGAAGATGAAACAGGACTGTGTGATGAATCAACTCAAGCAACAGATGAATCCGTCAAAGTAGGTATCAGTTCTGAAGGAATGGCTATTACTGGCTCATTGCTACAAGATGTTGCAAACATAACTACTACCAATCAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGATGGTAAAAATCAATCAGATTCTAAAGCTGGCAGTGATACCCTTAGAAAATATAATACACAACCTGTTGACACTGCATTAGAGGCCAAAGAATCAACAGAAATAAGTAGTAGCTCTTTAAAAGAAGAGATCATCCAGTTGACAGTGTCAGGTGGCTCAGAGAAATCTATTGAAGAAAACAATGCGAGGGAATTGAAAACATGCAACAGAGTGGAAATGGAAAGTGATTCAGTACAGCAATCTATTTGTGCTATCAAAGATGGTACTGAACCAAGTAGAAGGGTCGTTGAGGACAAGAATATCAAAATAGGTGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 3933 0.4063 MFSNEVEDLFDDNFEGSNEERQIFSEVFSGDDIFQSSQKCLVPGAISLEHESAKNTFKSFCSSNENSAALHPSSSRLTHHEEGNINVIQHSKEAVPECVPESFICEDHNDEDVNVKRMKFSLHELACSRSNSEKNLSSSRLSKVAVSNLSCAATGCDSEPIAFRLVESSKRGVISSCYLLNHNKLNKQAVKDDVDVTNFNTTADGHTAKEVSVSKAAASPVSQESFASKLVVTNPSITVVKKSGSPLNPEEMPESTNVDISNSTSMLPEEDPRTILQFQIVQLLTMAGWSIEKRQRPSRRYPESVYRTPKGKPIREFTKAWRICGELLSVEKCNLMCRDYKEWTDISQFWSDLSSALINVEKTKMQSQDPAAILAYRWWLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKVACAPIDSGSGNLNQVPGGSNVNAVHHAKIRNSRSLDKQSSENYLETNNIIDGHVPMDMSEENNASGVSYGLVHSHDSRAMQQSECSEEEGGKILVDSVFGKDNTYSVSNVTLRKKMRRKCKRVSEIKLSMFYHGDMLGSTVTDQVQSLDGGACGLEEVQNYQADNAGKKRSCRKLSSVSTIQRNIRKTNCSITGTDRSSRCQIKDDDLLVSAIFRNKDFGPKAIRGNSRAKSCKSRGQRKLKSQKGRCRLLPRNPSNGGKYNKDCNRFYLGARTILSWLIDNGVISLNDVIQYRNAKDNVVIKDGRITKDGIMCICCGKVLTLSEFKLHAGFTLNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVQADDNDKNDDSCGLCGEGGELICCDNCPSTFHAACLSSQEIPDGDWYCANCTCRICGNLVIDKDTSDMHDLLQCSQCEHKYHEKCLKDRETQEVAVSDIWFCGQSCQEVYSGLQSQVGLVNQVADGISWSLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVTAIEQMLTSFKVERLVVSAIPDLVETWTKGFGFKPVDDVERKRLNKFNLMIFPGTVFLEKPLYGKMKNEDETGLCDESTQATDESVKVGISSEGMAITGSLLQDVANITTTNQVEAKSEHEPVDGKNQSDSKAGSDTLRKYNTQPVDTALEAKESTEISSSSLKEEIIQLTVSGGSEKSIEENNARELKTCNRVEMESDSVQQSICAIKDGTEPSRRVVEDKNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS* 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01074 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 841 897 IPR013083 -
Lapu5g01074 1310 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 949 1096 IPR000182 GO:0016747
Lapu5g01074 1310 MobiDBLite consensus disorder prediction 242 266 - -
Lapu5g01074 1310 Pfam PHD-finger 799 840 IPR019787 -
Lapu5g01074 1310 PANTHER PHD FINGER FAMILY PROTEIN 2 1227 - -
Lapu5g01074 1310 SUPERFAMILY FYVE/PHD zinc finger 791 844 IPR011011 -
Lapu5g01074 1310 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 948 1072 IPR016181 -
Lapu5g01074 1310 Pfam Tify domain binding domain 721 771 IPR032308 -
Lapu5g01074 1310 CDD PHD2_CHD_II 798 838 - -
Lapu5g01074 1310 MobiDBLite consensus disorder prediction 1161 1177 - -
Lapu5g01074 1310 Gene3D - 944 1080 - -
Lapu5g01074 1310 ProSiteProfiles Zinc finger PHD-type profile. 796 841 IPR019787 -
Lapu5g01074 1310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 840 IPR013083 -
Lapu5g01074 1310 MobiDBLite consensus disorder prediction 1146 1177 - -
Lapu5g01074 1310 SMART PHD_3 798 839 IPR001965 -
Lapu5g01074 1310 SMART PHD_3 840 894 IPR001965 -
Lapu5g01074 1310 SUPERFAMILY FYVE/PHD zinc finger 839 890 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01074 Lapu-Chr5 21754698 21765331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01074 5 1158 PHD Transcription Factor Family AT3G14980 40.678 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu5g01074 TDBD 5.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01074 - - gmx:100795889 2192.54