Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01072 ATGGGGTCACCATTCAGGCCAATCTCATGCACCAGAAAAGCTCCATACAGAATAGAAACCAAGAACTTATCATACAAGTTGTACAGCCAACTTGAAGAGTATAGAAGTCTTTGTTTTGGTTCCAGTCCAGGGAGAGGTGCCAAATTCATTTTGAAGGATGTAAATTGTGAGGCAAGGCCAGGGGAGCTGACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCAGGGAGAATACCCCCATGCAATAAAGTGTCTGGCCACGTGCTTGTCAATCATAGGCCTATGGATGTGAACCAGTTTAGAAGGACATCGGGGTATGTGACACAAGATGATGCTTTATTCCCTTCATTGACAGTTAGAGAGACACTCATGTATAGTGCCATGCTGAGGCTTCCTGGGGGAAGAAAAGTTGCTGCTGTCAGAGTTGAAGAGTTGATGAAGGAGCTTGGGTTGGACCATATTGCAGATTCAAGAATTGGAGGTGGATCAGACCATGGCATATCCGGAGGGGAAAGGCGTAGGGTTTCCATTGGTGTGGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTTAACGTAGTCTCATTGCTTAGACTTGTGGCGTTTAATCAAGGTAAGACAATTATCTTAACTATCCACCAACCTGGTTTCCGAATCTTAGAGCTATTTGATGGCCTCGTTTTGCTGTCCGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAGGCTAGGCTCAAGTTAGCTGGGCACCACATTCCGGACCATGTCAATGTCCTTGAGTTTGCTCTCGATGTCATGGAAAGCTTGGTTATACATACTTCAGAATCTGCGGACAACAAGTTTCTGCTCAAAGAGAACCAAGATCATAAAATGAGAATGCAGTACTCTAAGGTTGTCAAAGTAAAGGCACCTGCGTATTCAAATTCTCCTATGGAGGAGATTTTAATCCTGGGACAAAGGTTTTGCTGCAACATATTCAGAACCAAGCAACTATTTGTCACCAGAATCATACAGGCCATAGTAGCTGGTTTTGTTCTGGGTAGCATATTTTTCAATGTTGGCAAACAACAAAGTCATGTAGCATTGCAAACAAGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCAACAACAGAAGGCTTGCCCATTTTCTTGGATGAGAGAAGAACTTTTATGAGAGAGACCTCTGGAGGAGCTTATAGAGTTTCCTCCTATGTTTTAGCTAATGCCCTTGTGTTCCTTCCCTTCCTTCTACTGGTTGGTCTTCTGTACTCTACTCCAGTTTATTGGCTTGTAGGATTAAGGAAAGACATCGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTTCTACTCATGTCGAACTCTCTTGTGGCTTGTTTCAGCGCTCTGGTGCCAAATTTCATCCTGGGAACCTCAGTGATAGCAGGTCTAATGGGGTCTTTCTTTCTATTCTCAGGGTATTTCATATCTGAGGAAAAAATACCAAGTTACTGGATTTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAGTATGGGGGAGAGCGAGGGAAAACGATGTGCTTAGAAATTAGCAACGGAAAATGCATACTACATGGAGTTGAATTCTTAAGACAACAGGGTCTGAAAGATTCACAAAAATGGAGCAATTTGCCTTTAATGTTGAGTTTCATAGTTGGATATAGAGTGCTTAACTTTTTTATTCTTTGGTTCAGATGCTACAGGACAAGAAAATAG 1836 0.4216 MGSPFRPISCTRKAPYRIETKNLSYKLYSQLEEYRSLCFGSSPGRGAKFILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRIPPCNKVSGHVLVNHRPMDVNQFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAVRVEELMKELGLDHIADSRIGGGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALNVVSLLRLVAFNQGKTIILTIHQPGFRILELFDGLVLLSDGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMESLVIHTSESADNKFLLKENQDHKMRMQYSKVVKVKAPAYSNSPMEEILILGQRFCCNIFRTKQLFVTRIIQAIVAGFVLGSIFFNVGKQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLDERRTFMRETSGGAYRVSSYVLANALVFLPFLLLVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLMINEYGGERGKTMCLEISNGKCILHGVEFLRQQGLKDSQKWSNLPLMLSFIVGYRVLNFFILWFRCYRTRK* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01072 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 275 IPR003439 GO:0005524
Lapu5g01072 611 Pfam ABC transporter 51 202 IPR003439 GO:0005524
Lapu5g01072 611 FunFam ABC transporter G family member 10 35 281 - -
Lapu5g01072 611 Pfam ABC-2 type transporter 334 545 IPR013525 GO:0016020|GO:0140359
Lapu5g01072 611 Gene3D - 16 276 IPR027417 -
Lapu5g01072 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 596 - -
Lapu5g01072 611 SMART AAA_5 60 252 IPR003593 GO:0016887
Lapu5g01072 611 CDD ABCG_EPDR 41 257 - -
Lapu5g01072 611 Pfam ABC-2 type transporter 232 300 IPR043926 GO:0140359
Lapu5g01072 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 267 IPR027417 -
Lapu5g01072 611 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01072 Lapu-Chr5 21731900 21733735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01072 31 262 Calmodulin-binding Proteins AT2G36910 27.049 1.05e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01072 K05681 - gmx:100807754 1106.66