Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01070 ATGATTAACAATGGAGTCTGCACTCTCCGCACCTGCCTCCGTTTTCCGGAGAGGCCACTATTCCGACCAATGCTGCGCTCCTTCACTTCCCGGCGGCGGTTTCTGGTGACTGCATCCGGAACGAAGAAGAAAGAGAAGGTGATTGTGATTTCTGGACCCACCGGTTCCGGTAAGAGCCGCCTCGCATTGGAACTCGCTAAGCGCCTCAACGGCGAAATCGTCAGTGCCGACTCCGTTCAGGTGTATCGGGGGCTTGATGTTGGTTCTGCAAAGCCATCCCCGGATGAAAGAAAGGAGGTACCGCATCATCTGGTTGACATACTGCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGAGGATGCAAGGCAAGCTACAAGATGTATTCTTGACAATGGCCGTGTTCCCATAGTTGTTGGAGGCACTGGATTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTACCTAAAGCTTTGCCAGATATTACATCTGAAGTAAATCAAGAATTAGCTGAACTACAGAGGAACGAAGACTGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCCGGTGATCCAAAGGCTCAATTTCTAACCATGAATGATTGGTATCGATTACGGAGAAGCCTAGAGATTATTAAGTCTAGTGGATCACCTCCTTCTGCATTTCGGCTACCGTATGATTCTTTCAGGGAACATAGTGAATGTAGTGTTGCGGAGGGTTCTGAGCCGTCTGATTTGAACACTTACCGTGATGCAATGGAAGAAACCAGCTCATCGGAGTTAGACTATGAGTTCATGTGCTTTTTCCTTTCTAGTCATAGACTTGATCTTTATAAATCAATTGATTACCGGTGTGAAGATATGCTTTTAGGAAGGGACGGGATTTTGTCCGAGGCTCAATGGCTTCTTGATACGGGTCTTCATCCAAACTCCAATTCTGCAACTAAAGCAATTGGTTACAGACAAGCCATGGAGTACTTACAAAGATGCAGAGAGCAAGGGGGTCAGAGTTCTGTTGCAGAATTTTATAAATTCTTGTTTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGGCAATTGACATGGTTTCGTAATGAAAACATATACGAGTGGCTTGATGCATCTAAACCTCTGGAAACCATTCTCAATTTCATTAATGACGCATACCATGATTGGAATGGAAGTCTTCTTGTGCCTGAACACCTAAGAATGTCGAGAGATATTGCTAATCGCCGAGAAGCTACACAAATAAAGTCTTATCGCACCAAAAATAGGCATTTTGTGAAGGGGGAAGATTGTTCTCATATTCTTAACTGGATAAGCAAGACACAAAGGTGA 1347 0.4417 MINNGVCTLRTCLRFPERPLFRPMLRSFTSRRRFLVTASGTKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSPDERKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKALPDITSEVNQELAELQRNEDWDAAVQLVVKAGDPKAQFLTMNDWYRLRRSLEIIKSSGSPPSAFRLPYDSFREHSECSVAEGSEPSDLNTYRDAMEETSSSELDYEFMCFFLSSHRLDLYKSIDYRCEDMLLGRDGILSEAQWLLDTGLHPNSNSATKAIGYRQAMEYLQRCREQGGQSSVAEFYKFLFEFQKASRNFAKRQLTWFRNENIYEWLDASKPLETILNFINDAYHDWNGSLLVPEHLRMSRDIANRREATQIKSYRTKNRHFVKGEDCSHILNWISKTQR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01070 448 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Lapu5g01070 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 175 IPR027417 -
Lapu5g01070 448 Gene3D - 44 438 IPR027417 -
Lapu5g01070 448 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Lapu5g01070 448 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 379 IPR039657 -
Lapu5g01070 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 386 IPR027417 -
Lapu5g01070 448 Gene3D - 159 226 - -
Lapu5g01070 448 Hamap tRNA dimethylallyltransferase [miaA]. 47 386 IPR018022 GO:0008033
Lapu5g01070 448 Pfam IPP transferase 80 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01070 Lapu-Chr5 21688800 21696236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01070 50 330 C2H2 Transcription Factor Family AT2G27760 27.972 2.56e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01070 K00791 - gmx:100808814 815.839