Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01062 ATGCGTCCTGCTGATACCAAGAAGGCACCATATGTGGCGCGTGTGGAGAAAATTGAACCTGGTCATAAGAATGACATGAAGGTTCATGTTAGGTGGTACTATAGACCTGAAGATTCTATTGGAGGACGTAGGGAATTCCATGGAAAGAAAGAATTGTTTTTGTCTGACCATTATGATGTACAAAGTGCTCATACCATTGAAGGGAAGTGTGTTGTGCACTCTTTCAAGAACTATACCAAGCTTGAGAATGTAGGTGATGAGGATTATTATTATAGGTTTGAGTACAAGGCTACTACTGGTGCTTTTACACCTGATCGTGTACTTGTGTATTGCAAGTGTGAGATGCCTTATAACCCAGATGTTCTTATGATGCAGTGTGAGATATGCAAGAATTGGTAA 399 0.4035 MRPADTKKAPYVARVEKIEPGHKNDMKVHVRWYYRPEDSIGGRREFHGKKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGDEDYYYRFEYKATTGAFTPDRVLVYCKCEMPYNPDVLMMQCEICKNW* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01062 132 Gene3D - 1 102 IPR043151 -
Lapu5g01062 132 SUPERFAMILY FYVE/PHD zinc finger 101 132 IPR011011 -
Lapu5g01062 132 Pfam BAH domain 2 105 IPR001025 GO:0003682
Lapu5g01062 132 ProSiteProfiles BAH domain profile. 1 106 IPR001025 GO:0003682
Lapu5g01062 132 SMART BAH_4 1 106 IPR001025 GO:0003682
Lapu5g01062 132 PANTHER OS08G0421900 PROTEIN 1 132 - -
Lapu5g01062 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 132 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01062 Lapu-Chr5 21491962 21492458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01062 11 102 Core DNA Replication Machinery Family AT4G14700 27.957 8.18e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01062 K25868 - rvl:131323021 246.514