Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01056 ATGGATCAAATAACGGATTCAGAAATGGATCAACAGAGAAGAGGCTATCATCATTCTGAGCCCTGTATCGTTACAAGAGGAACCACAAACATCTCACAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTCTGCCGGATGCTTATGACAATGCTAGGGTGTACGGTGTTACACACTACAATGGCATTCAGCATCCCCATAATCTTGATATGGGTGTGCCGGCTGCAGCCAACTTATACTACTCTGGCATGAATCCTTCTTCTGGTGCTGGAGTTTTCCCCATGCCTCTAAATCACAGAGCCTCTGATCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTATCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCCTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCTAGACACACTACTGAAGGTGTTGCTATGATGGATACTGCACCATTTTCATTCCGCATCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAGCAGGGCAGGTGAGTCTATTATGGTGCATGACCATAATCATTTGATTCATGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCACCATGGTTGGACCCGCAATTGAATGGTAACAATAATGATGGCCATACTACACCCTGGAATCAGTCGCTTCCATTGCCTTATGTACAAGTCTGTCTGACCCTCTCCATACTATTTTCAGCACCTGCTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGTTTGCAGAGATATCATGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAACCAACAGCACCATAATTATCATCACCTGGCACATCCTATGCAAGGAGTAAGAGGTCACAATATCAACTTTCACCCTGCAGTAACTGCAGCATCATTTAGAGTTCCAACAAATCCTTCACGTGGTGTAGCTATCCCAGCCCAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCACCAGCTGGCTTCCGGATTTACCGACCTCATAGAGGGCCTGTGCCTGAGACAACTCTTGGACATCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGGAATTTAGTTGATCATCACAGAGACATGCGCTTGGACATAGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGCGAGAGGATTGGCAATGTTAGCACCGGTTTGTCAGAGGAAACAATTACAACTCAGATGAAAACAAAGTCTTATTCAACAAGTGCTACTGGTATTAATGTGGAGGAGGAAGCTTGTGATGATCATGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGGGTTCTTCGATGTGAGCATGAATATCATGCAGATTGCTTAAGGAAGTGGTTGGTTGTGAAAAATGTCTGCCCCATATGCAAATCGGAGGCTTTGACTCCTGGAAGGAAGGATGTATAG 1617 0.4459 MDQITDSEMDQQRRGYHHSEPCIVTRGTTNISQPNNMHAMVRASGNTTNVDSHFLPDAYDNARVYGVTHYNGIQHPHNLDMGVPAAANLYYSGMNPSSGAGVFPMPLNHRASDQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARHTTEGVAMMDTAPFSFRIPSLVEVGPHGSAWSRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDPQLNGNNNDGHTTPWNQSLPLPYVQVCLTLSILFSAPAVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHLAHPMQGVRGHNINFHPAVTAASFRVPTNPSRGVAIPAQPGFELGPRHVGPAPPAGFRIYRPHRGPVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITTQMKTKSYSTSATGINVEEEACDDHETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTPGRKDV* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01056 538 FunFam E3 ubiquitin ligase BIG BROTHER 446 531 - -
Lapu5g01056 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 531 IPR013083 -
Lapu5g01056 538 Pfam Ring finger domain 484 527 IPR001841 -
Lapu5g01056 538 SUPERFAMILY RING/U-box 478 531 - -
Lapu5g01056 538 SMART ring_2 486 526 IPR001841 -
Lapu5g01056 538 CDD RING-H2_RNF24-like 484 530 - -
Lapu5g01056 538 ProSiteProfiles Zinc finger RING-type profile. 486 527 IPR001841 -
Lapu5g01056 538 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 142 531 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01056 Lapu-Chr5 21337336 21341473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01056 403 531 C3H Transcription Factor Family AT2G15530 46.667 1.69e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01056 K19041 - gmx:100800642 811.601