Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01055 ATGAAGAAACCGAAGCAAACTCAGCTGAACCCCAATTGGCTTCAACTCCAACAAAAGCTGAATGTCTCCAAGGCTTCAAGGACCTTCAAAAGTTCAAATGAAGATACCCCAGAATCTATATTGGGGAAACGTAAAGAGCGATCAGATGAGGAATCCAATGATAGTCAGATTAATCCTCTTACTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATGGATTGTGAAATGGTTGGTGTTGGTCAAGGAAACAAAAGTGCTCTTGGAAGAGTAACTCTGGTCAATAAGTGGGGAAATGTTATTTATGACGAGTTTGTTCGGCCAATTGAACGAGTTGTTGACTTTCGTACTCAAATTAGTGGCATAAGGCCTCGAGATCTTAGAAAAGCAAAGGATTTTTGGACTGCTCAGAAGAAAGTGTCAGAGTTGATCAACGGAAGGATCCTTGTTGGTCATGCCTTGTCCAATGACCTTAAGGCATTGTTATTAAGTCATCCCAAAAGGGAAATAAGAGATACCTCCGAGTACCAACCATTTCTAAGATCAAGTAGCAGAAGAGCACTGCGGCATCTTGCTGCCGAACATCTTGGTGTGAAAATCCAAACAGGAGAGCACTGCCCAATACAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGAAATAAGAGGGAATGGGAGAAGAGCCTAAAAGATCAATTTCGGTTCAAAAAGAAGCAACGGAAATTGAAGCAGAAAAAGAAGCAGAAGATTGAAGATGCTTCAAATGCAAACCATTTTGAAATTGGATCATAG 798 0.4135 MKKPKQTQLNPNWLQLQQKLNVSKASRTFKSSNEDTPESILGKRKERSDEESNDSQINPLTPVNDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFRTQISGIRPRDLRKAKDFWTAQKKVSELINGRILVGHALSNDLKALLLSHPKREIRDTSEYQPFLRSSSRRALRHLAAEHLGVKIQTGEHCPIQDARAAMLLYQRNKREWEKSLKDQFRFKKKQRKLKQKKKQKIEDASNANHFEIGS* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01055 265 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 35 246 IPR047021 GO:0004527
Lapu5g01055 265 SUPERFAMILY Ribonuclease H-like 72 229 IPR012337 -
Lapu5g01055 265 MobiDBLite consensus disorder prediction 37 53 - -
Lapu5g01055 265 Pfam Exonuclease 73 220 IPR013520 -
Lapu5g01055 265 Coils Coil 238 258 - -
Lapu5g01055 265 CDD REX4_like 73 221 IPR037431 GO:0006364|GO:0008408
Lapu5g01055 265 MobiDBLite consensus disorder prediction 24 68 - -
Lapu5g01055 265 Gene3D - 67 249 IPR036397 GO:0003676
Lapu5g01055 265 FunFam Interferon-stimulated exonuclease gene 20 68 239 - -
Lapu5g01055 265 SMART exoiiiendus 71 229 IPR013520 -
Lapu5g01055 265 MobiDBLite consensus disorder prediction 54 68 - -
Lapu5g01055 265 MobiDBLite consensus disorder prediction 238 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01055 Lapu-Chr5 21316388 21323635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01055 72 222 C2H2 Transcription Factor Family AT5G40310 38.323 1.21e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01055 K18327 - gmx:100819122 427.943