Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01043 ATGGCTCCAAGGGACAGAGCCACCGCACTCGCCGGGCCCAGCCCAAGCCCAACATCGGCCCACAAAGAGATCCGCTACAGAGGCGTCAGGAAACGTCCCTGGGGCCGTTACGCCGCCGAGATCCGCGACCCGGGCAAGAAAACCCGGGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCACGAGCCTACGACGCCGCCGCCCGTGACTTCCGAGGCGCCAAAGCTAAGACCAATTTCCCCACACCTTCGGAGCTTCTCATAAACAACAATAGCAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACGCTCGACTCTTCTTCTACGCCGCCACCGCCGCTTGACCTCACGCTCACCCCTCTCTCCGCCACGGTTCTCCCGGTGGCCCGTCCAGTCCTCTTTTTCGACGCCTTCGCGCGTGCGGACGCCGTGATCACAGTCGGCCGCCGCGACACATGCGGCTTCGAACGTCCGGTGGCCGATTTCCGTCATAGCGACTCAAATCCTGAGCGACGCGCGCTCCTGGATCTCGATCTTAACGTGCCTCCTCTTCCCGAGGTTGCGTGA 579 0.6373 MAPRDRATALAGPSPSPTSAHKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTPSELLINNNSSNNNSARSPSQSSTLDSSSTPPPPLDLTLTPLSATVLPVARPVLFFDAFARADAVITVGRRDTCGFERPVADFRHSDSNPERRALLDLDLNVPPLPEVA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01043 192 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lapu5g01043 192 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Lapu5g01043 192 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Lapu5g01043 192 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Lapu5g01043 192 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Lapu5g01043 192 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Lapu5g01043 192 MobiDBLite consensus disorder prediction 76 119 - -
Lapu5g01043 192 MobiDBLite consensus disorder prediction 1 29 - -
Lapu5g01043 192 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Lapu5g01043 192 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lapu5g01043 192 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Lapu5g01043 192 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 139 - -
Lapu5g01043 192 MobiDBLite consensus disorder prediction 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01043 Lapu-Chr5 21139770 21140348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01043 22 163 AP2-EREBP Transcription Factor Family AT3G15210 59.006 1.75e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu5g01043 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01043 K09286 - gmx:100813652 251.136