Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01042 ATGAAGCGTTCGCGCAGAGGTAATGGCGACGGCGAAGGTGGCGAGGGAGGTTCGAAGAATAAAGCACGTGAGCGAGAAGAAACCGGTCACTCGCAGGGTCATACGCTCCCCGTTCCTCAGACTCAAGAATCTCATCAATGCACCGCCGCGGACAACCGCGAAGACCTTGACGAAACCGCGACAGACGGCGAGACATTCGATGACCTCGGCCTGGCGGAATGGGCGGTGAAGACGTGCCGGGAACTCGGAATGCGGAAGCCTCGGCGCGTGCAGCAGCGGTGCATACCGCCGGTGCTAGAGGGCCGGCACGTGCTGGGCATCGACGAGACCGGGAGTGGGAAGACTGCGGCCTTCGCTCTCCCGATCCTGCATCGGCTCGCGGAACACCCATTCGGCGTGTTCGCTCTCGTAGTGACGCCCACGCGCGAACTCGCGTTCCAGCTCGCGGAGCAGTTCCGCGCTCTTGGCTCAGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACCTGGGAGAATCCACGTCTTGCTCCGTGATAACCCGGATATTTCTCGTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGTTTGTTTTCAGGAGGAGTTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCTACAACTACAAGTAATCTGCAAAAGTTGCGTGAACGTTACCAAGATAAGATGTATGTCTATGAGGCATATGAAGGCTTTAAAACAGTTGAATCGCTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATTTTGACTAAAATGGAAGATATGGGAATTCGGTCTGCCATCGTGTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCAGCAGCTCTTTATTCATTCAAATCGCAAACTCAGAGGCTTGAAGCACTTCATCAATTTAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTCCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGTACAGCAAGAGCAGGTAGAGGGGGACTGGCTTTGAGCCTTGTTACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCGCTTATTGAGAAGCAACTTGAAATGATCGAATACAAAGAAAGTGAGGCACTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAGCTGAAAATGCTTGCAGAGAGAGGATTGTTGAAGAAAAATAAAAAGAGAAAACGAAGTAAAGAATTTTCAGAGGAAGGGCAAGAGGTTTTCGGTGCTAAGAATGTGGAGGAGATGAAGACAGGTGAGGATGGCATTGAGGGGGAAACAAAAACTAAAAATGCTAAAAGACAAAAGTTTGTTAAAGAAAAAAAGTTAAAAGAAAAAAGTAAAGAATTTGCAGTGGAAGGAAAAAACAGAAAAAAGAGAAAGTAG 1677 0.4651 MKRSRRGNGDGEGGEGGSKNKAREREETGHSQGHTLPVPQTQESHQCTAADNREDLDETATDGETFDDLGLAEWAVKTCRELGMRKPRRVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSAVHLRITVVVGGMDMLKQAKDLVARPHLVIATPGRIHVLLRDNPDISRVFSRTKFLVLDEADRVLDVCFQEELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMHILTKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMKMIDDGFEEKAKERKKQKLKMLAERGLLKKNKKRKRSKEFSEEGQEVFGAKNVEEMKTGEDGIEGETKTKNAKRQKFVKEKKLKEKSKEFAVEGKNRKKRK* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01042 558 Gene3D - 275 508 IPR027417 -
Lapu5g01042 558 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 62 546 - -
Lapu5g01042 558 Gene3D - 28 268 IPR027417 -
Lapu5g01042 558 SMART helicmild6 322 403 IPR001650 -
Lapu5g01042 558 MobiDBLite consensus disorder prediction 1 49 - -
Lapu5g01042 558 MobiDBLite consensus disorder prediction 33 47 - -
Lapu5g01042 558 CDD DEADc_DDX49 66 269 - -
Lapu5g01042 558 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 95 268 IPR014001 -
Lapu5g01042 558 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 442 IPR001650 -
Lapu5g01042 558 Pfam DEAD/DEAH box helicase 89 257 IPR011545 GO:0003676|GO:0005524
Lapu5g01042 558 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 64 92 IPR014014 GO:0003724
Lapu5g01042 558 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 214 222 IPR000629 -
Lapu5g01042 558 MobiDBLite consensus disorder prediction 493 530 - -
Lapu5g01042 558 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 423 IPR027417 -
Lapu5g01042 558 Pfam Helicase conserved C-terminal domain 307 403 IPR001650 -
Lapu5g01042 558 SMART ultradead3 83 283 IPR014001 -
Lapu5g01042 558 MobiDBLite consensus disorder prediction 1 31 - -
Lapu5g01042 558 MobiDBLite consensus disorder prediction 484 558 - -
Lapu5g01042 558 CDD SF2_C_DEAD 280 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01042 Lapu-Chr5 21102225 21109853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01042 64 416 Eukaryotic Initiation Factors Gene Family AT3G13920 33.144 2.84e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01042 K14778 - gmx:100798597 800.045