Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01041 ATGGACTCCTCCTACCACCACTTGGACCACACTGAAGCTCACCTGCCACCTGGCTTTAGGTTCCATCCCACTGACGAGGAGCTCATAACGTACTACCTTCTCAAAAAGGTTCTAGACAGCACCTTCACTGGTAGAGCCATAGCTGAAGTTGACCTTAACAAGAGTGAACCATGGGAGCTCCCAGAGAAAGCTAAGATGGGTGAGAAAGAGTGGTACTTCTTCAGCTTACGTGACAGGAAGTACCCAACTGGGTTACGAACCAATAGGGCTACGGAAGCTGGTTACTGGAAAGCCACTGGGAAAGATAGAGAGATTTACAGCTCCAAGACTTGTTCTTTGGTAGGGATGAAGAAAACCTTAGTTTTCTACCGCGGTAGAGCTCCCAAGGGGGAGAAAAGTAACTGGGTCATGCATGAGTATCGCCTTGAAGGCAAATTTGCTTACCACTACCTTTCTCGCAACTCCAAGGATGAGTGGGTCATCTCACGCGTGTTCCAGAAGAGCAACACAACCAACGGAGGCTCCGCCATGTCTGCTTCAAGTGGCTCGAAGAAAACAAGAATGAACAGCAACAGCACTCTATGCCCGGAGCCAAGTTCACCCTCGTCAGTTTACCTTCCACCTCTTCTAGACTCTTCTCCCTACACAGCCACTACCGCCACAGTCAACTTCACTGACCGTAACAACTGTTCCTATGACAGCACCACCAAAAAGGAGCACGTGTCCTGTTTCTCCACAATCGCTGCAGCCACCGCTGCCGTTGTCTCCCCCAACAACTTCTCCAGTGCAAGCTTCGACCTTCCACCGGCTCAGTCTGTTGGAACGGATCCCTTCGCTAGGTTTCAGAGAAACGTTGGGGTCTCTGCTTTCCCTAGTTTGAGGTCACTGCAAGACAATCTTCAGTTACCATTCTTCTTTCCTCCGGCTGCACAGCCCTTCTCCGGCGGTGGCGCCGGTGATCTCCTCTGGCCGATGCCGGAGGAGCAAAGGCTGGTTGACGCGGCCTCCAACCTTCCACTGGGGGTGTCGGAGCTTGATTGTATGTGGGGATACTAG 1056 0.5189 MDSSYHHLDHTEAHLPPGFRFHPTDEELITYYLLKKVLDSTFTGRAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRNSKDEWVISRVFQKSNTTNGGSAMSASSGSKKTRMNSNSTLCPEPSSPSSVYLPPLLDSSPYTATTATVNFTDRNNCSYDSTTKKEHVSCFSTIAAATAAVVSPNNFSSASFDLPPAQSVGTDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFPPAAQPFSGGGAGDLLWPMPEEQRLVDAASNLPLGVSELDCMWGY* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01041 351 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Lapu5g01041 351 SUPERFAMILY NAC domain 11 167 IPR036093 GO:0003677|GO:0006355
Lapu5g01041 351 Gene3D NAC domain 24 172 IPR036093 GO:0003677|GO:0006355
Lapu5g01041 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 226 - -
Lapu5g01041 351 ProSiteProfiles NAC domain profile. 15 167 IPR003441 GO:0003677|GO:0006355
Lapu5g01041 351 FunFam NAC domain-containing protein 100-like 24 171 - -
Lapu5g01041 351 MobiDBLite consensus disorder prediction 171 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01041 Lapu-Chr5 21024891 21026700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01041 1 351 NAC Transcription Factor Family AT5G53950 52.821 3.03e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g01041 NAM 2.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01041 - - vun:114185732 629.017