Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01033 ATGGAGATCAAGAGTAGAGATAGGAGGCAAGTGTCGATTGAGAAGGTGAGGAGAGACAGCCCGATTGAAGTAGAAGATGAGGAAGAGGAGGAGGATGAAAGTGTGGCTGGCGGTGAGGGCTGTCTTGCAGAAGATGAGAGGAAGAAGGTTGGTGGAGGTGGTGGAAGAAGAGGGTCTACTGGAAGTGGAGTTTCTCCACCTTCTTGTCAGGCAGAGATGTGTGGTGCTGATTTGACTGTTGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGCTTCATTCTAAGGCACCTTTTGTGATGGTTGCAGGAACGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTGGCAGAGTTTGATGAAGCTAAAAGAAGCTGCAGGAGACGCTTGGCCAGACACAATGAGCGGCGCCGGAAGAACAATGCTGAAACTTGCACTGAAGGATGCAGCAGCAGCAAAGGGCAGCACCCCACAGAGAGCGTCTGCAGAAATGCTGATGACTGGGGAAGAATTCAGATGAACATGGCAAGGAATTCTGGTTACAGGTCCTTCCATTTCAGATGA 573 0.5061 MEIKSRDRRQVSIEKVRRDSPIEVEDEEEEEDESVAGGEGCLAEDERKKVGGGGGRRGSTGSGVSPPSCQAEMCGADLTVAKRYHRRHKVCELHSKAPFVMVAGTRQRFCQQCSRFHELAEFDEAKRSCRRRLARHNERRRKNNAETCTEGCSSSKGQHPTESVCRNADDWGRIQMNMARNSGYRSFHFR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01033 190 MobiDBLite consensus disorder prediction 1 69 - -
Lapu5g01033 190 MobiDBLite consensus disorder prediction 1 22 - -
Lapu5g01033 190 Pfam SBP domain 69 142 IPR004333 GO:0003677
Lapu5g01033 190 SUPERFAMILY SBT domain 67 147 IPR036893 GO:0003677|GO:0005634
Lapu5g01033 190 MobiDBLite consensus disorder prediction 147 162 - -
Lapu5g01033 190 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Lapu5g01033 190 MobiDBLite consensus disorder prediction 144 163 - -
Lapu5g01033 190 Coils Coil 119 139 - -
Lapu5g01033 190 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Lapu5g01033 190 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 154 IPR044817 GO:0003677
Lapu5g01033 190 MobiDBLite consensus disorder prediction 23 39 - -
Lapu5g01033 190 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01033 Lapu-Chr5 20806041 20807038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01033 55 147 SBP-box Gene Family AT1G53160 65.591 2.69e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu5g01033 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01033 - - gmx:100815775 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g01033 5 20806041 20807038 Lapu5g01033 5 20806041 20807038 ECH