Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g01016 ATGGAGGGTTCTTCAGGGTCTGCTTTTCAGAATTCTGGCAGTTCTAGGGCTTTGAATAGTTCTGGAGTCTCGGATAGGAACCAAAGGGTTCATTATCCTGAAAGGAACCATTTCTCGGGTGAGGCATCGCAGGATTCGGGGTTTAAAAAGGAAAGGGAAAGGGTTGTGTTGGGTCAAGTTGATCAGCCTAAAAATTTGGGTGGTGGTTTTTCTGGGTTATGTGGAGATGAGGTGGAGGTTGATCCCTTTTATGGTGCTGTGGAATGGGGTGATATCAGCTTGAGGCAATGGTTGGATAAATCTGAACGATCGGTGGATGCCTTTGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAGTGTAGCGCATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCATGTTTTGTCATGTCTTCTTTCAACCATATCTCGTTTATTGAATCAGCATCTTGTTCAGATACTGGCTCCGATTCTTTAGGAGAAGGATTAAACGACCAAGGTGGTGAGATGAAAACTCCAACATCTCTCTGTCCCCATGATATGCATCAGCAGAGCTTGGGAAGTGAAGATTTTATGGCTGTCAAGACTTCAACAACTACTGCTCGATCAGATTCTAGTTGCATGCTGTCGAGTGCTGTGTATGCAGCTCGTGCATCTTTGATAGAAGAAACAGAAGAAAATAAAATGAAAGATAGGAGGAAGGATGAAGAAGTAGAAGGAAAGAAGCAATCATTTCCAATGAAGCAGATACTGCTAATGGAGATGAGTTGGTACTCTAGTCCTGAAGAGGTTGCTGGTGAATCTAGTTCTTGTGCTTCAGATGTTTATCGATTGGGGGTTCTCCTTTTTGAGCTATTTTGTCCGCTAAGCTCGAGAGAAGAAAAGAGTAGAACCATGTCTAGCCTTAGACATAGGGTTCTTCCTCCACAGTTACTTCTAAAGTGGCCTAAAGAAGCTTCCTTTTGCCTATGGTTACTGCATCCTGACCCTAGTAGTCGTCCAACACTGGGGGAGTTGTTGCAGAGCGAGTTCCTTAATGAACAAAGAGATGATATGGAAGAACGTGAAGCAGCGATAGAGCTGAGACAAAGAATAGAGGATAAGGAGTTGCTGCTAGAATTCCTTTTATTACTTCAACAAAGAAAACAGGAAATTGTTGAGAAGATGCAACATACTATCTCTTTTCTGTGCTCAGATATTGAAGAGGTGACTAAGCAGCAAATTAGATTTAAAGAGATTACTGGTACTGAACTGGGGAGTGACGAGCGTTCAGCATCAAGTTTCCCATCAATGACTGTTGTTGACAGTGAGGATTCTGCATATTTAGGGACTAGAAAACGGGTCAGACTAGCGACACATGTTAAAAACATTGAGGAATGTGATGATAATGTTGATGATGATGGAGGAGATGATCAGAAAAGTAATGGAAGTTTTCTTTCAAAAAGTTCACGGCTAATGAAGAACTTTAAGAAACTTGAGTCAGCATACTTCTTAACACGATGTAGACCAGCTTATTCCTCTGGGAAACTGGTGACTAGGCATCCTCCTGTAACAAGTGATGGTAGAGGTTCTGTAGTTTTGACTGAAAGAAGTTGCATCAATGACTTGAAATCAAAAGAGCAGTGCAGGGAGGGTGCAAGTGCATGGATAAATCCTTTTCTTGAGGGTTTGTGCAAGTATTTATCATTCAGTAAGATAAAGGTTAAGGCTGACCTAAAACAAGGGGATCTTTTGCATTCATCCAACCTAGTATGCTCACTCAGTTTTGATCGTGATGGGGAATTTTTTGCTACTGCCGGTGTGAATAAGAAAATCAAAGTGTTTGAATGCGATTCAATCATAAATGAGGATCGTGATATCCACTATCCAGTTGTGGAGATGGCTAGCAAGTCAAAGTTAAGCAGTATATGTTGGAATGCATACATCAAAAGTCAAATTGCTTCAAGCAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTACTGTCTGAAATGAGGGAGCATGAGCGGCGGGTGTGGTCCATTGATTTCTCCTCAGCAGACCCAACAATGTTGGCAAGTGGGAGCGATGATGGTTCTGTCAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGTACCATCAAAACCAAGGCAAATGTCTGCTGTGTTCAGTTCCCTCTGGATTCTTCTCGTTTCCTTGCTTTTGGTTCAGCAGATCATCGAATATATTACTACGATCTCCGCAACCTAAAAATGCCGCTCTGTACTTTGGTTGGACATAACAAGACTGTCAGCTACATCAAGTTTGTAGACAGTGTGAACCTTGCCTCAGCTTCCACAGATAACACTTTGAAGCTTTGGGATTTGTCTGCGTGTGCATCTCGAGTTATAGACTCACCTATTCAATCATTCACAGGCCACGTGAATGTTAAGAACTTTGTGGGATTATCTGTATCTGATGGTTACATTGCCACTGGTTCAGAGACAAATGAGGTGTTCATATACCACAAAGCCTTCCCCATGCCAGCACTGTCATTCAAGTTTCAGAACACAGACCCTCTTTCTGGTCACGAAGTGGATGACGCCGTGCAATTTGTGTCATCAGTTTGTTGGCGGGGACAGTCGTCCACCTTGCTCGCCGCAAATTCCACGGGGAATGTCAAAATTCTGGAGATGGTTTAG 2688 0.4241 MEGSSGSAFQNSGSSRALNSSGVSDRNQRVHYPERNHFSGEASQDSGFKKERERVVLGQVDQPKNLGGGFSGLCGDEVEVDPFYGAVEWGDISLRQWLDKSERSVDAFECLHIFRQIVEIVSVAHSQGVVVHNVRPSCFVMSSFNHISFIESASCSDTGSDSLGEGLNDQGGEMKTPTSLCPHDMHQQSLGSEDFMAVKTSTTTARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYSSPEEVAGESSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQRIEDKELLLEFLLLLQQRKQEIVEKMQHTISFLCSDIEEVTKQQIRFKEITGTELGSDERSASSFPSMTVVDSEDSAYLGTRKRVRLATHVKNIEECDDNVDDDGGDDQKSNGSFLSKSSRLMKNFKKLESAYFLTRCRPAYSSGKLVTRHPPVTSDGRGSVVLTERSCINDLKSKEQCREGASAWINPFLEGLCKYLSFSKIKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMASKSKLSSICWNAYIKSQIASSNFEGVVQLWDVTRSQVLSEMREHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDSSRFLAFGSADHRIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDSVNLASASTDNTLKLWDLSACASRVIDSPIQSFTGHVNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALSFKFQNTDPLSGHEVDDAVQFVSSVCWRGQSSTLLAANSTGNVKILEMV* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g01016 895 Gene3D Transferase(Phosphotransferase) domain 1 91 361 - -
Lapu5g01016 895 SMART WD40_4 666 706 IPR001680 GO:0005515
Lapu5g01016 895 SMART WD40_4 799 838 IPR001680 GO:0005515
Lapu5g01016 895 SMART WD40_4 578 613 IPR001680 GO:0005515
Lapu5g01016 895 SMART WD40_4 624 663 IPR001680 GO:0005515
Lapu5g01016 895 SMART WD40_4 752 790 IPR001680 GO:0005515
Lapu5g01016 895 SMART WD40_4 709 748 IPR001680 GO:0005515
Lapu5g01016 895 SMART WD40_4 849 893 IPR001680 GO:0005515
Lapu5g01016 895 MobiDBLite consensus disorder prediction 1 49 - -
Lapu5g01016 895 SUPERFAMILY WD40 repeat-like 583 892 IPR036322 GO:0005515
Lapu5g01016 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 759 792 IPR001680 GO:0005515
Lapu5g01016 895 MobiDBLite consensus disorder prediction 1 27 - -
Lapu5g01016 895 ProSitePatterns Trp-Asp (WD) repeats signature. 777 791 IPR019775 -
Lapu5g01016 895 Pfam WD domain, G-beta repeat 583 612 IPR001680 GO:0005515
Lapu5g01016 895 Pfam WD domain, G-beta repeat 755 790 IPR001680 GO:0005515
Lapu5g01016 895 Pfam WD domain, G-beta repeat 669 706 IPR001680 GO:0005515
Lapu5g01016 895 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 556 895 - -
Lapu5g01016 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 759 792 - -
Lapu5g01016 895 Coils Coil 346 366 - -
Lapu5g01016 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 710 - -
Lapu5g01016 895 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01016 895 Gene3D - 559 895 IPR015943 GO:0005515
Lapu5g01016 895 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g01016 895 MobiDBLite consensus disorder prediction 28 49 - -
Lapu5g01016 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 715 IPR001680 GO:0005515
Lapu5g01016 895 SUPERFAMILY Protein kinase-like (PK-like) 81 351 IPR011009 -
Lapu5g01016 895 PRINTS G protein beta WD-40 repeat signature 777 791 IPR020472 -
Lapu5g01016 895 PRINTS G protein beta WD-40 repeat signature 650 664 IPR020472 -
Lapu5g01016 895 PRINTS G protein beta WD-40 repeat signature 693 707 IPR020472 -
Lapu5g01016 895 PANTHER PROTEIN SPA1-RELATED 2 39 895 IPR044630 GO:0009640
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g01016 Lapu-Chr5 20404812 20411124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g01016 663 837 Miscellaneous Gene Families AT5G08390 25.140 9.07e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Lapu5g01016 WD40 0.0001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g01016 K26557 - gmx:100811457 1655.96