Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00928 ATGGGAGTTCCAGAGAAAGACCCTCTTGCCCAGCTCAGTCTACCCCCAGGATTTCGGTTCTACCCCACCGACGAGGAACTTCTCGTTCAGTATCTCTGCCGCAAGGTCGCCGGCCATCATTTCTCTCTCCCCATCATTGCTGAGATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAGCAAGGCGATTTTCGGGGAGAAAGAGTGGTACTTTTTCAGCCCTCGAGACAGGAAGTACCCAAACGGGTCTCGACCCAACAGGGTAGCCGGGTCGGGTTATTGGAAAGCCACCGGAACCGACAAGATCATCACCACCGAAGGTAGAAAAGTTGGCATAAAAAAAGCCCTTGTCTTTTACGTTGGCAAAGCTCCGAAAGGCACCAAAACCAATTGGATCATGCACGAGTATCGCCTCCTTGACTCTTCCCGAAAGACCACTGGAACCAAGCTGGATGATTGGGTTCTGTGTCGTATATACAAGAAGAACTCGAGTGCACAGAAAGCGGTGCAAAACGGCGTGGTTTCGAGCAGGGAACACACTCAATACAGCAACGGTTCCTCGTCGTCGTCTTCGTCCCACCTTGAAGACGTTCTGGAATCGCTGCCAACGATCGACGAACGGTGCTTCGCGATGCCACGTGTGAACACGGTGCAGCAACAGCAGGAGCAGAAGGTGAACGTTCAGAACCTGGGTGCGGGTGGGTTGGTGGATTGGGCCAACCCTGCGGTGCTGAATTCGGTGGCTGATTTCGTTTCCGGGAATAATCAAGTGGTGCAGGACCATACACAGGGGATGGTGAACTACAACGGCTGCAATGACCTTTATGTCCCCACTTTCTGCCACGTGGACTCCTCGCTTCCGCAGAAGGTGGAGGAAGAGGTGCAAAGCGGCGTCAGAAACCAAAACAACAACTCGTGGTTTCTTCAGAACGATTTTACGCAGGGGTTTCAGAACTCGGTGGACACGTGTGGGTTTAAGTTCCCGGTTCAGCCGGTCGGGTTCGGGTTCAGGCAATGA 1020 0.5294 MGVPEKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKTTGTKLDDWVLCRIYKKNSSAQKAVQNGVVSSREHTQYSNGSSSSSSSHLEDVLESLPTIDERCFAMPRVNTVQQQQEQKVNVQNLGAGGLVDWANPAVLNSVADFVSGNNQVVQDHTQGMVNYNGCNDLYVPTFCHVDSSLPQKVEEEVQSGVRNQNNNSWFLQNDFTQGFQNSVDTCGFKFPVQPVGFGFRQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00928 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 224 - -
Lapu5g00928 339 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Lapu5g00928 339 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Lapu5g00928 339 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Lapu5g00928 339 FunFam NAC domain-containing protein 72-like 23 167 - -
Lapu5g00928 339 MobiDBLite consensus disorder prediction 170 197 - -
Lapu5g00928 339 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00928 Lapu-Chr5 15742429 15744670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00928 1 337 NAC Transcription Factor Family AT3G15500 57.514 1.86e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g00928 NAM 6.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00928 - - gmx:100170718 639.032